Dysgonomonas sp. HDW5B: G7051_15380
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Entry
G7051_15380 CDS
T09584
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dyh
Dysgonomonas sp. HDW5B
Pathway
dyh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G7051_15380 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dyh03400
]
G7051_15380 (mfd)
Enzymes [BR:
dyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G7051_15380 (mfd)
DNA repair and recombination proteins [BR:
dyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G7051_15380 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIK56316
LinkDB
All DBs
Position
complement(3732479..3735814)
Genome browser
AA seq
1111 aa
AA seq
DB search
MLESISPLHLFDGHTSIKAISSTLNKDKNLHIKGLLGSSWSVFVSALFNQKKGQYLYILD
DLETAGYFYHDLTQLLGSKDVLFFPSAYKRSIKYGQPDPANAILRTEVLSRLQGEDTPLI
IVTYPEAIAEKVVSKDTLKENTLRITVDEKIDSAFVSEVLDSYGFEYTEYVYEPGQYAIR
GSILDVFSYSSEYPFRIDFFGDEVETIRRFDIESQLSKEQLTSIQIIPEMSKASQLQDSL
LSLLPSETIIGFKDYSWIQGRINSIFEDSAILDNPEYEDDIQSKLISEPLFTNEILKFKK
MQFGNTCFGVADAAFEYQTALQPIYHKNFDLVSKSLHDFMAQGYTIYILSDSMKQIERLK
TIFDDRGDNIPLIPINKTLHEGFYDQTLKICCFTDHQIFDRFHKYNLKSDNARTGKIALS
LKELKQLQIGDFVVHNDHGVGKFGGLVRLIVNEKLQEHIKITYLNNDAIFVPIHSLYKIS
KYRGKDGEAPRLNKLGSGAWQKMKENTKKRLKDIARDLIILYSKRNEEEGFKFSPDTFMQ
NELEASFIYEDTPDQVTATADVKKDMENHRPMDRLICGDVGFGKTEVAVRAAFKAVADNK
QVAVLVPTTVLATQHFKTFRDRLKDFPCKVDYISRARKPAAVKELLDKLKKGEIDILIGT
HRIVNKDIQFKDLGLLIIDEEQKFGVSVKEKLKQMKSNVDTLTMTATPIPRTLQFSLMGA
RDLSTITTPPPNRYPTQTEVHTFDPQIIAEAINFEMSRNGQVFFLNNRINNLPEIEATIR
KGVPDARIAVAHGQMPPTKLEEIITDFVDYEYDVLIATSIIESGIDIPNANTIIINNAQR
FGLSDLHQLRGRVGRGNRKAFCYLLAPPLDSLTIEAKRRLQAIENFAELGSGIHIAMQDL
DIRGAGNLLGAEQSGFIADLGYEAYQKILTEAVTELKNNEFAELYHESKDGEKNKGDNFV
DDVLIESDLELLFPPIYIPNDSERISIYSTLNNLEKEEEITDFVKMLEDRFGKIPQEGLD
LIGVIRIRRIAKYLSIEKVILKKGQMLLYLVSNPDSLYYQSQAFDKLLNYVQGHHRDCQL
RENQGKRSIIIKHVENVEKAYNVLNDIFLQE
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
attttggaatcgatttctcctctccatctttttgacggacatacaagcataaaagcaata
tcaagcaccctaaacaaagacaaaaacctacacatcaaaggtttacttggttcttcgtgg
tcagtatttgtttcagccttatttaatcaaaaaaaagggcaatatttatacatactggat
gatctggaaacggcaggatatttttatcatgaccttacccagctattaggatctaaggat
gtacttttttttccgtctgcttacaaacggtcaattaaatacggacaacctgaccctgca
aatgctatactcaggaccgaagtattaagtcgtctgcaaggagaagatacgcctcttatt
atagttacctatcccgaagccatcgccgaaaaggttgtatcaaaagatacgcttaaagag
aataccctgcgcattactgtagatgaaaaaatagactctgcatttgtatcggaagttctc
gattcgtatggtttcgaatatacggagtatgtatatgaacccggtcagtatgccataaga
ggtagtatattagacgttttttcgtattcgagcgagtacccttttcgtatcgacttcttt
ggcgatgaggtagaaacaatcagacgttttgacatcgaaagtcagttatcgaaagaacaa
ttgacttctattcagattattcccgaaatgtctaaggctagtcaacttcaagactctctg
ctaagcctgttaccttcggaaacaatcatcggattcaaagattactcgtggatacaagga
cggatcaattctatattcgaagatagtgcgatattagataatcctgaatacgaagatgat
attcaatcgaaactaatatccgaacctctttttacaaacgagattctcaaattcaaaaaa
atgcaattcggtaatacctgctttggtgtagccgatgctgcttttgaatatcaaacagct
ttacagccgatttaccataaaaacttcgatttagtaagtaaaagccttcatgattttatg
gctcagggatatacaatttatattctgagtgatagtatgaagcaaatcgagcgtctgaaa
acaatatttgacgacagaggggataatataccgctgatacctatcaataagactctgcat
gaaggtttttacgaccagactctaaaaatatgctgttttacggatcatcagatttttgat
cgttttcataagtacaacctgaaatcggacaatgcccgcaccggaaaaattgctttaagc
cttaaagagttaaagcaattgcaaataggtgactttgttgttcacaatgatcatggagtt
ggtaaattcggcgggcttgtcagacttatagtcaacgaaaagctgcaagaacatattaag
attacttatctgaataatgatgccatatttgtaccaatacactctttatataaaatatca
aaatacagaggtaaggatggagaagctcctcgtttaaataaattaggatcgggtgcatgg
cagaaaatgaaagaaaacacgaaaaaacgtctaaaagacattgcccgtgatcttatcatt
ttatattcgaaacgaaacgaagaagaaggcttcaagttctcacctgacactttcatgcaa
aatgagctcgaagcatcatttatatacgaagatactcccgaccaagtaacagctactgcc
gatgtcaaaaaagatatggagaatcatcgtccgatggacaggcttatctgtggcgatgtc
gggtttggaaaaacagaagttgcagtaagagcagcatttaaagcggttgctgacaataaa
caagtagctgttcttgtcccgactaccgttttggcaactcaacactttaaaactttcaga
gatcgtttaaaagatttcccatgcaaagtagactacatcagtagagcgagaaaaccggct
gctgtaaaagaactacttgataaattaaaaaaaggagaaattgatattcttattggtaca
caccgaattgtcaataaagatattcaattcaaagatctagggctattaattattgatgaa
gaacaaaaatttggagtttctgtaaaagagaagttaaagcaaatgaagtctaatgtagat
acattgactatgactgctacgcctatcccaaggacacttcaattctcgttgatgggtgcc
cgtgacctttcgacaatcacaactcccccacccaaccgatatcctacgcaaacggaggta
catactttcgaccctcaaatcatagcagaagctatcaacttcgaaatgagtcgaaacgga
caggtattcttccttaataacaggataaataatttacccgaaatagaagcaactatccgg
aaaggagttcccgatgcacgtattgcagtagctcacggacaaatgcctcccacgaagtta
gaggaaataatcacagattttgtagattacgaatatgatgtactgatcgcaacttctatt
atagaatcgggaatagatatacccaatgcaaatacaataataataaataacgctcaacga
ttcggactaagcgacctgcatcagctacgaggacgtgttggacgtggcaaccgcaaagcg
ttctgttatctgcttgctcctccgttggatagtttaacgattgaagctaaacgaagatta
caggctatcgaaaattttgctgagttaggtagtggtatacatatagccatgcaagactta
gatatacggggagcaggaaacctgttgggagccgaacaaagtggttttattgctgactta
ggttacgaggcctatcaaaagatattaaccgaagctgttaccgaattaaagaataacgaa
tttgccgagctataccacgaaagcaaagacggagagaaaaacaaaggtgataacttcgtt
gatgatgttctgatcgaaagtgatctggaactcttatttcctccaatttatatacctaat
gattcggaacgtatatctatttacagtactctgaataatctggaaaaagaggaggaaata
accgattttgtaaaaatgctggaagaccgttttggtaaaattccacaggaaggtttagat
ctcatcggtgtaattcgtatccgcagaatcgctaaatacttaagtatagagaaagttatt
cttaaaaaagggcaaatgttgctttatctggtttcgaaccccgattcgttatactaccaa
tcacaagcctttgataagcttctaaattatgtacaaggacatcacagagattgtcaatta
agggaaaaccaaggaaaacgttctatcattataaaacatgtagaaaatgtagaaaaagca
tacaatgtattgaatgatatctttctacaagaataa
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