Dysgonomonas sp. HDW5A: G7050_04460
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Entry
G7050_04460 CDS
T06482
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
dys
Dysgonomonas sp. HDW5A
Brite
KEGG Orthology (KO) [BR:
dys00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dys03009
]
G7050_04460 (rlmD)
Enzymes [BR:
dys01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
G7050_04460 (rlmD)
Ribosome biogenesis [BR:
dys03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
G7050_04460 (rlmD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
MTS
N6_N4_Mtase
Cons_hypoth95
Methyltransf_15
TRM5-TYW2_MTfase
PrmA
Methyltransf_11
PCMT
UPF0020
Motif
Other DBs
NCBI-ProteinID:
QIK59134
UniProt:
A0A6G7X3G3
LinkDB
All DBs
Position
complement(1071543..1072952)
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AA seq
469 aa
AA seq
DB search
MRKDRKPQPIYPSVEIVDIAAEGKAIAKIDNMIVFVPFVVPGDIVDLQLSRKKKNYAEGK
PVRFEKYSDIRTEAFCEHFGVCGGCKWQILPYQEQLRYKHKQVEDNLTRIGKVDLPEIQP
ILGSEKTEFYRNKLEFTFSNKKWLTWEQVQSGVTFDNMNAVGFHIPGCFDKVLEINKCWL
QDDVSNQLRNFVREYCYAKEYTFFDLRNRGGLMRTLIIRTSTTGELMVIVVFYDDEKEKH
EDLLNAIAEKFPQITSLLYIINQKANDTITDQEVLTWKGNDYIYEEMEGLKFKIGPKSFY
QTNSEQAYNLYKITRDFAGLTGNELVYDLYTGTGTIANFVARNARKVVGIEYVEDAIEDA
KFNSQNNKTENTLFYAGDMKDILTQDFINEHGKPDVIITDPPRAGMHDNVIEAILFAEPE
RVVYVSCNPATQARDLNLLDAKYKVEKVQPVDMFPHTHHVENVVLLIKK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaagatagaaaaccccaacctatatatccatcagtggagatagtagatattgct
gccgaaggtaaggctattgccaagatcgataacatgatcgtgttcgttcccttcgtggtt
cccggtgatatcgttgatcttcaactgagccgtaagaaaaagaactatgctgaaggaaaa
cctgttcgtttcgagaaatactcggatatacgtaccgaagcattttgtgaacacttcggg
gtttgtggaggttgtaagtggcagattcttccttatcaggagcaattaagatacaagcat
aaacaagtagaggataacttgactcgcatcggtaaagttgatttgccggagattcaaccg
atcttaggatctgagaaaacagagttttacagaaacaagttggagtttactttctccaat
aaaaaatggctgacttgggagcaggttcagtcaggagtaacgttcgataatatgaatgct
gtcggttttcatattcccggctgtttcgataaagtattagagattaataagtgttggtta
caagacgatgtgtctaatcaactgcgtaatttcgtacgtgaatattgctatgctaaagaa
tatacattcttcgatctgagaaacagaggaggattgatgcgtaccttaatcattcgtaca
tctactacaggagagctaatggtgattgtggtattctacgatgatgagaaagagaaacat
gaagacctgctaaatgctattgcagagaagttcccacaaataacttctttattgtatatt
atcaatcaaaaagccaacgatacaataaccgatcaggaagtgttgacatggaaaggcaat
gactatatatatgaagagatggaaggtctgaaatttaaaataggccctaagtcattctat
caaaccaatagcgaacaggcttataatctgtacaaaataactcgtgactttgccggatta
acaggcaatgaacttgtatatgatttatatacaggaacaggtactattgctaattttgtg
gctcgtaatgcccgaaaagttgtaggtatagagtatgttgaagatgctattgaagatgca
aaattcaactctcaaaataataaaacagaaaataccctgttttatgcaggtgatatgaag
gatatcctaacacaggattttatcaatgaacatggtaagcccgatgtgattataaccgat
cctccccgtgcaggtatgcacgataatgttatcgaagctattttgtttgcagaaccagag
cgtgtggtttatgtgagctgtaatcctgcaactcaggcaagagacttgaatctgttggat
gctaaatataaggtggagaaagttcagccggtggatatgttcccacatacgcatcatgtc
gaaaatgtagttttgttaattaagaaataa
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