Dysgonomonas sp. HDW5A: G7050_05050
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Entry
G7050_05050 CDS
T06482
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dys
Dysgonomonas sp. HDW5A
Pathway
dys03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dys00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G7050_05050 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dys03021
]
G7050_05050 (rpoC)
03400 DNA repair and recombination proteins [BR:
dys03400
]
G7050_05050 (rpoC)
Enzymes [BR:
dys01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G7050_05050 (rpoC)
Transcription machinery [BR:
dys03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G7050_05050 (rpoC)
DNA repair and recombination proteins [BR:
dys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G7050_05050 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QIK59238
LinkDB
All DBs
Position
1199782..1204065
Genome browser
AA seq
1427 aa
AA seq
DB search
MAFRKDSKVKSSFSKITVSLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERTGHIHLVVPVAHIWYFRSLPNKM
GYLLGIPTKKLDMIIYYERYVVIQAGIKEEEGVAYKDLLTEEEYLNHLDTLPKDNQLLDD
MDPNKFIAKMGAEAVYDLLARLNLDSLANTLRHRANTDTSQQRKNEALKQLQVVEAFRGS
KAKNRPEWMVVKIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIKAP
DVILRNEKRMLQEAVDSLFDNSRKSSAIKTESNRPLKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPELKMHECGLPKDMAAELFKPFVIRKLIERGIVKTVKSAKKIVDRKEPVV
WDILEHVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLSCTAFNADFDGDQMAV
HLPLGNDAVLEAQMLMLASHNILNPANGAPITVPSQDMVLGLYYITKIRPGAQGEGLTFY
GPEEAIIAYNEKKVDIHALIKVYVRDLDENGQVATIMRETTVGRVLVNQNTPIEVGFINE
ILSKKSLRDIIGNIIKLAGVAKTAQFLDDIKDLGYTMAFRGGLSFNLEDVIIPAEKETLV
KQGYDEVEQILGNYNMGFITYNERYNQIIDTWTHINSKLSNILMKQLSEDDQGFNAVYMM
LDSGARGSKEQIRQLSGMRGLMAKPQKSGAEGAQIIENPILSNFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVSQDVIINEEDCGTLRGLVCTELKNNEEVVASLYERI
LGRVSVHDIQHPLTGEVLVESGEQIREEAATIIQNSPIERVEIRSVLTCESKKGVCAKCY
GRNLATGRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGIASNIATENSIMTKYDGILE
IDDLRVVETIDEAGKKVQIVVSRLVEIRVVDPNTKIVLLTHNIPYGAKLYFKEGANVKKG
DVICEWDPFNAVIVSEATGKIKFENVIENVTYKVESDEQTGLKEKIIIESRDKTKAPEAH
ILDEKGNIIKTYSLPLGAHVVKEDGDTMKAGDVLVKIPRAVGKAGDITGGLPRVTELFEA
RNPSNPAVVSEIDGEASFGKIKRGNREVIITSKTGEIKKYLVPLSKQILVQENDFIRAGM
PLSDGATTPSDILAIMGPTAVQEYIVNEVQDVYRLQGVKINDKHFEVIVRQMMRKVEVVD
PGDTRFLEQQVIDKHEVMEENDRIWGKKVVVDAGDSSTFEPGQIVTARKLRDENSMLKRR
DLRIVEVRDAIPATANQILQGITRAALQTQSFMSAASFQETTKVLNDAAIHGKVDRLEGL
KENVICGHLIPAGTGQRDFDKLVVGTKEDFDRVMANRKTVVDFDSVE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagaaaagatagtaaagtaaagagtagcttttcaaaaatcacagtaagtctt
gcttctccggaagaaattctggaaaattcaagcggtgaagtcttgaaacccgaaactata
aactatcgtacctacaaacccgaacgtgatggtttgttctgcgaacgtatttttggtccg
gtaaaagactacgaatgtcattgcggtaaatacaaacgtatccgatataaaggtatcgtc
tgcgaccgttgtggtgtagaggttactgagaaaaaagtaagacgcgagcgtaccggtcac
atccacttggtagtgcctgttgctcacatctggtatttccgttctttacctaacaaaatg
ggttatcttcttggtataccaaccaagaaacttgatatgatcatttattacgaacgttat
gttgtaatacaagctggtatcaaagaagaagaaggtgttgcttataaagatttattgact
gaagaagaatatctaaaccacttggatacacttcctaaagacaatcaactgttggacgac
atggatccaaacaagtttattgccaaaatgggagctgaagcggtttacgatctattggct
cgtttgaatctcgattcattggctaatacacttcgtcacagagctaatacagatacttct
caacaacgtaaaaacgaggctttgaaacaacttcaagttgtggaagctttccgtggatcg
aaagcaaaaaatcgcccggaatggatggttgttaagattgtacctgtaataccacccgaa
cttcgtccactggttcctttggatggaggtcgttttgctacatctgacttgaatgacttg
tatcgtcgtgttatcatacgtaacaaccgtttgaaacgattgatcgacattaaagctccg
gatgtaatccttcgtaatgagaaacgtatgcttcaagaggctgtggattcattgtttgat
aactctcgtaaatcgagtgcaatcaaaacagaatcgaaccgtcctcttaaatcactttcc
gatagtttgaagggtaaacaaggacgtttccgtcaaaaccttttgggtaaacgtgttgac
tattcggctcgttcggtaattgtcgttggacctgaattgaagatgcacgagtgtggtctt
ccaaaagatatggctgctgagctattcaaaccatttgtgatccgtaaattgattgagcgt
ggtatcgtgaaaacggtaaaatctgctaaaaagattgttgatcgcaaagaacctgtagta
tgggatattcttgagcatgtgatgaaaggtcaccccgtattgctcaaccgtgcccctact
cttcaccgtttgggtattcaagcattccaacctaaaatgatcgagggtaaagcaatccaa
ttgcacccactttcatgtactgccttcaatgccgactttgacggtgaccagatggctgtt
cacttacctttgggtaacgacgctgtattggaagctcaaatgttgatgcttgcttctcat
aatatcttgaaccctgctaacggtgcacctattactgtaccttctcaggacatggtattg
ggattgtattatatcacaaaaatacgtccgggagcacaaggggaaggtcttactttttac
ggacctgaagaggctattattgcttataatgagaagaaagtggatatacatgcccttatt
aaagtgtatgtaagagaccttgacgagaacggacaagtggctacaattatgcgtgaaact
acggttggacgtgtacttgtaaaccaaaatactccgatcgaagtaggatttatcaacgaa
atcttatctaaaaaatcactaagagatattatcggtaatatcatcaaattggcaggagtt
gctaaaacagctcagttccttgacgatattaaagatcttggatatacaatggcattccgt
ggaggattgtcgtttaaccttgaggatgtaattatccccgcagaaaaagaaacgctggtt
aaacaaggatatgatgaagttgaacagattctaggaaactacaatatgggattcatcacc
tataacgagcgttacaaccagattattgatacctggacacacatcaactctaagttgtcg
aacattttgatgaaacaactttcggaagatgaccaaggttttaatgctgtatacatgatg
cttgattcgggagcccgtggttctaaagagcagattcgtcagttgtcaggtatgcgtgga
ttgatggcaaaacctcagaaaagtggagcggaaggtgctcaaattattgagaatcctatc
ctttctaactttaaagaaggtctgtcggtgttagagtactttatctctacccacggtgct
cgtaaaggtcttgccgatacagcattgaaaacagccgatgcaggatacttaacacgtcgt
ctggttgacgtatcacaagatgtgatcatcaatgaagaagactgtggtacacttcgcgga
cttgtttgtacagaacttaaaaacaacgaagaagttgtagcttcactatacgaacgtata
ttgggtcgtgtttcggttcatgatattcaacatcctttgacaggagaagtccttgttgag
tctggagaacaaatcagagaagaagccgctacaattattcaaaattcaccaattgagcgt
gttgaaatccgttcggtattgacttgcgaatctaaaaaaggcgtatgtgctaagtgttac
ggacgtaaccttgctacaggtcgtatggttcaaaaaggagaagccgttggagttatcgct
gctcagtctatcggtgagcctggtacacagcttacacttcgtacgttccacgtagggggt
atcgcttcgaatattgctactgaaaacagcatcatgacaaaatacgatggtattttggaa
attgatgacctgcgtgttgttgaaactatcgacgaagcaggtaagaaagtacaaatcgtt
gtgagccgtctggttgaaatacgtgtggttgatcctaatactaaaatcgtattacttact
cacaatattccttatggtgctaaactttatttcaaagaaggtgccaacgttaagaaaggt
gatgtaatttgcgaatgggatccatttaatgctgttatcgtatcggaagcaacaggtaag
attaagttcgaaaacgtaatagaaaatgttacttacaaagtagagtcggatgaacaaacc
ggtttgaaagaaaagatcattatcgaatcgcgtgataagactaaagctcctgaagcacac
attctggatgaaaaaggcaatataatcaaaacatacagtttacctcttggtgctcacgtt
gtcaaagaagatggcgacactatgaaagccggagatgtactggttaagatacctcgtgct
gtaggtaaagcgggtgatattaccgggggtcttcctcgtgttaccgagctattcgaagca
cgtaatccgtctaaccctgctgttgtatctgaaattgatggagaggcttcgtttggtaag
atcaaacgtggtaacagagaggtaattattacatctaaaacaggtgaaataaagaaatat
ctggttccactttctaaacaaattctggtacaagagaatgactttatccgtgcaggtatg
cctttatcggatggtgctactactccttcggatattcttgctatcatgggaccaactgcg
gtacaagagtatattgtaaacgaagtacaggatgtataccgtctgcaaggtgtgaaaatc
aatgataaacacttcgaagttatcgtacgtcagatgatgcgtaaggtagaagtggttgat
ccgggagacactcgtttccttgagcaacaagtgattgataagcatgaggtaatggaagaa
aacgatcgtatctggggtaaaaaagtggttgtagatgcaggtgactcttctacattcgaa
cccggacagattgttacagctcgtaaactgagagacgaaaactcgatgttgaaacgacgt
gaccttcgtatagtagaagttcgtgatgcaattcctgcaactgcgaatcagatacttcaa
ggtatcacccgtgcggctcttcaaacacaaagcttcatgtcggctgcttcgttccaggaa
actactaaggttcttaacgatgctgctattcatggtaaggttgacagattggaaggtctg
aaagaaaacgttatttgcggtcacttgattcctgcaggtacaggtcaacgagattttgat
aagcttgttgttggtactaaagaagattttgacagagtaatggctaacagaaagactgtt
gttgattttgacagtgtagagtag
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