Dysgonomonas sp. HDW5A: G7050_11550
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Entry
G7050_11550 CDS
T06482
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dys
Dysgonomonas sp. HDW5A
Pathway
dys03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dys00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G7050_11550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dys03019
]
G7050_11550
Enzymes [BR:
dys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G7050_11550
Messenger RNA biogenesis [BR:
dys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G7050_11550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
UvrD-helicase
ERCC3_RAD25_C
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
QIK60425
LinkDB
All DBs
Position
complement(2781624..2782898)
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AA seq
424 aa
AA seq
DB search
MTFEQLNLIEPILKALKDQNYTTPTPIQAEAIPTLLEGNDLLGVAQTGTGKTAAFSIPII
QLLHKENSHGGRKGIKALVLTPTRELAIQIEENVKEYSKYTSLRHTVIYGGVPQKKQTDA
LRAGIDILIATPGRLLDLISQKYINLKTLEFFVLDEADQMLDMGFIHDIKKILPLLPKQR
QSLFFSATMPVEIAKLANTILHNPTRVEVTPASSTVDKIEQSIYHVDKKDKVDLLIDLLK
NKELESVLVFARTKHGSDKVAKALNKAGVKTEAIHGNKSQNARQNALKSFKDKTTRVLIA
TDIAARGIDVDHLSHVFNFDLPNVPETYVHRIGRTGRAGRSGVAIAFCDREELPLLKDIH
KLIKKNIPVVEEHDYLPSKSRAIPIAKPELAKDNHRSQSKGHQDRPNKTQRPQGHTKVIV
KKQN
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgaacaattaaacctcatagagcctatattgaaagctcttaaagaccaaaac
tatacaactccaactcctatacaagctgaagcaataccaaccctattggagggaaatgac
ttactaggtgtagctcagacgggaacaggaaaaacggcagcattctctatccctattatt
caactgctacataaagaaaattcacatggtggcagaaaaggtataaaagccttagtatta
acaccaacccgtgaacttgctatacagattgaagaaaatgtaaaggaatacagtaaatat
acttctttgcgacatactgtaatttacggaggagtacctcaaaagaaacaaactgatgct
ttacgagcaggaattgatattcttatcgcaactcccggaaggctgttagacctgattagc
caaaagtatatcaatcttaagactcttgagttttttgtattggatgaggcagatcagatg
ctcgatatgggttttattcatgatatcaaaaagatattgcccttattacctaaacaaagg
caatcgcttttcttttcggctaccatgcctgtagagattgctaaactggcaaataccatt
ctgcataatccgacaagggttgaggttactccggcatcttcaactgtagacaagattgaa
cagtcgatctatcatgtcgataaaaaagataaagtagatctccttatcgaccttctaaag
aataaagaacttgaatctgttttagtatttgcacgtactaaacacggttctgataaagta
gccaaggctcttaacaaagccggtgtaaaaaccgaagctatacatggaaataaatctcag
aatgcacgtcaaaatgcattgaagagtttcaaagataaaacaactcgtgtacttatagct
accgatattgcagcacgtggaatagatgtcgatcatctttcgcacgtattcaatttcgat
ttacccaacgttccagagacttatgttcaccgtatcgggcgtacgggtcgtgccggtcgt
agcggtgttgccattgcgttttgtgatcgagaagaattgcctttattaaaggatatacac
aaactcatcaagaagaatattcctgtcgttgaagagcacgattatttgccttctaaatca
agagctattcctattgcaaaacctgaactggcgaaagataatcatagaagccaaagcaaa
ggtcatcaagatcgtccgaataaaactcaaagacctcagggacatactaaggttatagta
aaaaaacagaactaa
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