Dickeya zeae: W909_00020
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Entry
W909_00020 CDS
T03567
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
dzc
Dickeya zeae
Brite
KEGG Orthology (KO) [BR:
dzc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dzc03032
]
W909_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
dzc03400
]
W909_00020 (gyrB)
Enzymes [BR:
dzc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
W909_00020 (gyrB)
DNA replication proteins [BR:
dzc03032
]
Prokaryotic type
DNA Topoisomerases
W909_00020 (gyrB)
DNA repair and recombination proteins [BR:
dzc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
W909_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
DUF6865
Motif
Other DBs
NCBI-ProteinID:
AJC64580
LinkDB
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Position
4001..6412
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AA seq
803 aa
AA seq
DB search
MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIV
VTIHSDNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKLELVIRREGKIHRQEYRHGEPQAPLSVTGDADTTGTTVRFWPSLETFTNVV
EFEYDILAKRLRELSFLNSGVSIRLRDEREANKADHFHYEGGIKAFVEYLNRNKTPIHPQ
VFYFSAEKDGIGVEIAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMDK
EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNDRLVD
YLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSE
LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG
RDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEVIERGHVFIAQPPLYKVKK
GKQEQYIKDDDAMDQYQIMLALDGAALHTNAHAPAMAGEPLEKLVAEHYSVQKLIGRMER
RYPRALLNALIYQPSLTEAMLSSQADAQSWMEALIQFLNEKEQHGSTYSFLLRHANERHE
PVLRVRTHGVDSDYALDLAFVQGNEYRKINGLGEKLRGLIEEDAFVERGERKQPVASFEQ
ALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADELFTTLM
GDAVEPRRAFIEENALKAANIDI
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaattcttatgactcctcaagtatcaaggtattaaaagggctggatgcggtccgt
aaacgcccggggatgtatatcggtgatacggatgacggaaccggtctgcatcacatggta
ttcgaggtggtggacaacgctatcgacgaagcgctcgcaggctattgtaaagatattgtc
gttactattcattcggataactcggtatcggtgcaggatgacggccgtggtatcccgacc
ggtattcatgaagaagagggtgtgtccgcggctgaagtcatcatgaccgtgctgcatgcg
ggcggtaagttcgacgataactcctataaagtatccggcggtttgcacggggtaggggta
tcggtggtgaacgccctgtccgagaagctggagctggttatccgccgtgaaggcaaaatt
catcgtcaggaataccgtcatggcgaaccgcaggcaccgctgagcgtcaccggtgatgca
gacaccactggcaccacggtgcgtttctggccgagtctggaaaccttcaccaatgtggtc
gagtttgaatacgacattctggctaagcgcctgcgtgaattgtcgttcctcaactctggc
gtgtctatccgcctgcgcgatgagcgcgaagcgaataaagccgaccatttccactacgaa
ggcggcatcaaggcgtttgtggagtacctgaaccgtaacaagacgccgattcacccacag
gtgttctatttcagcgctgaaaaagacggtatcggcgtggaaatcgccatgcagtggaac
gacggtttccaggaaaatatctactgctttaccaacaacattccgcagcgtgacggcggt
acccatctggcgggtttccgtgctgccatgacccgtacgctgaataactacatggacaag
gaaggctacagcaagaaagccaaagtcagcgctaccggcgatgacgcgcgcgaagggctg
attgcggtggtatcggtgaaggtgccggatccgaaattctcttcccagaccaaagataag
ctggtgtcttcagaggtgaaatcagcggtggaatcgctgatgaacgaccgtctggtggac
tacctgatggaaaaccccagcgatgctaaaatcgtggttggcaaaatcatcgacgccgcc
cgcgcccgtgaagccgcacgtaaagcccgtgagatgacccgccgtaaaggtgcgctggat
ctggctggtctgccgggcaaactggctgactgtcaggagcgtgacccggcgttgtctgaa
ctgtacctggtggagggtgactccgcaggcggttccgccaagcagggtcgtaaccgtaag
aatcaggccattctgccgttgaaaggtaagattctgaacgtggaaaaagcgcgtttcgat
aagatgctgtcttcgcaggaagtggcaacgcttatcaccgcactgggttgcggcattggt
cgcgatgagtacaacccggacaaactgcgctaccacaacatcatcatcatgaccgatgcg
gacgtcgacggttctcacattcgtactttgctgctgaccttcttctatcgccagatgccg
gaagtcatcgagcgtggtcatgtgtttatcgcccagccaccgctgtacaaagtgaagaaa
ggcaagcaggaacagtacatcaaagacgacgacgcgatggaccagtaccagattatgctg
gcgctggacggtgccgcgttgcacaccaatgcccatgctccggcaatggcgggtgagccg
ctggaaaaactggtggcggagcactacagcgtgcagaagctgatcggtcgtatggagcgt
cgttacccccgtgcgctgcttaatgcgttgatttatcaaccgtcgctgacggaagccatg
ttgagttcgcaggctgatgctcaatcatggatggaagcgctgatccagttcctcaatgaa
aaagagcagcacggcagcacctacagcttccttctgcgtcatgccaacgaacgccacgaa
ccggtgttgcgcgtgcgcacccatggcgtggattctgattacgcgctggacctggcgttt
gttcagggtaatgagtatcgcaaaatcaatggactgggtgagaaactgcgtggtctcatc
gaagaagacgcgtttgttgagcgtggcgagcgtaaacagccggtcgccagcttcgagcag
gcgttggactggctggtgaaagaatcgcgccgcggcctggctattcagcgttataaaggt
ctgggtgagatgaacccggaacagttgtgggaaaccaccatggacccggaaagccgccgt
atgctgcgtgtgacggtaaaagacgccatcgctgccgacgagctgttcaccaccctgatg
ggtgacgccgttgaaccgcgccgtgcctttatcgaagaaaacgccctgaaagcagcgaat
attgatatttga
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