Dickeya zeae: W909_00730
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Entry
W909_00730 CDS
T03567
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dzc
Dickeya zeae
Pathway
dzc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dzc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
W909_00730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dzc03400
]
W909_00730
Enzymes [BR:
dzc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
W909_00730
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
W909_00730
DNA repair and recombination proteins [BR:
dzc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
W909_00730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AJC64713
LinkDB
All DBs
Position
158594..159403
Genome browser
AA seq
269 aa
AA seq
DB search
MPELPEVETSRRGISPWLVGRTILYAEVRNARLRWPVSPEILSLSDTPVLSVQRRAKYLL
LELPTGWIIIHLGMSGSLRVLPEYSEPDKHDHVDLVMDSGKVLRYTDPRRFGAWLWCDDL
ANSSVLAHLGPEPLSDDFSGDYLFSRCHGRKTPIKLWIMDNKLVVGVGNIYASESLFNAG
ILPERPAGSLSQQEAHQLVQSIKQVLQRSIEQGGTTLRDFLQSDGKPGYFAQELQVYGRH
GKPCHHCGTLIDSIKQGQRSTFFCKRCQR
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacccgaggtggaaaccagtcgtcggggtatttcgccctggctggttggc
cgtaccattttgtatgctgaggtgcgcaatgcacgtctgcgctggccggtctctcctgaa
attctgtcgctgagcgatacgccggtgttgagtgtgcagcgccgcgccaaatatctgctg
cttgagctaccgacggggtggatcatcatccatttggggatgtccggtagtctacgggtg
ctgcccgaatacagtgaaccggataagcatgaccatgtcgatttggtgatggatagcggc
aaagtgctgcgttataccgatccacgccgtttcggtgcctggttatggtgtgacgatctg
gcaaacagttctgtgttggcgcatttggggccggaaccattgagcgatgacttttcaggt
gactatctgtttagccgctgccatggccgtaaaacgccaatcaagctgtggattatggat
aacaaactggtggtgggggttggcaacatctatgccagtgagtcgctgtttaatgccggt
attctgccggagcggcctgccggttccctgtcgcagcaagaagcgcatcagttggtgcag
tccatcaagcaggtattgcagcgctccattgaacagggcgggaccacgctgcgtgatttc
ttgcagtctgatgggaaaccgggttacttcgcgcaggagttacaggtttatggccgccat
ggcaagccttgccatcactgcggcacattgatcgacagcattaagcagggacagcgtagc
acctttttttgcaagcggtgccagcgttag
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