Dickeya zeae: W909_00800
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Entry
W909_00800 CDS
T03567
Symbol
rfaD
Name
(GenBank) ADP-L-glycero-D-mannoheptose-6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
dzc
Dickeya zeae
Pathway
dzc00541
Biosynthesis of various nucleotide sugars
dzc01100
Metabolic pathways
dzc01250
Biosynthesis of nucleotide sugars
Module
dzc_M00064
ADP-L-glycero-D-manno-heptose biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Brite
KEGG Orthology (KO) [BR:
dzc00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
W909_00800 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
dzc01005
]
W909_00800 (rfaD)
Enzymes [BR:
dzc01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
W909_00800 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
dzc01005
]
Core region
W909_00800 (rfaD)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
KR
NAD_binding_10
adh_short
Motif
Other DBs
NCBI-ProteinID:
AJC64726
LinkDB
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Position
complement(173793..174725)
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AA seq
310 aa
AA seq
DB search
MIIVTGGAGFIGSNIVKALNDNGHRDILVVDNLKDGTKFVNLVDLDIADYMDKEDFIASI
VAGDDLGDIDAIFHEGACSSTTEWDGKYMMDNNYQYSKEVLHYCLERGIPFLYASSAATY
GGRTDNFVEDRQYEQPLNVYGYSKFLFDQYVRDILPQADSQICGFRYFNVYGPRESHKGS
MASVAFHLNNQINQGENPKLFAGSENFKRDFIYVGDVAAVNLWFWQHNVSGIFNCGTGNA
ESFQAVADAVLAWHNKDQVEYIPFPEKLKGRYQAYTQADLTNLRAAGYDKPFKTVAQGVA
DYMAWLNRKA
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgattatcgtaactggcggtgccggtttcatcggcagcaacatcgtaaaagcgctgaat
gataacgggcaccgggatatcctggtggtcgacaacctgaaggatggcaccaagttcgtc
aatctggtcgatctggacatcgccgactacatggataaagaagatttcattgccagtatc
gttgccggtgacgatttgggtgatatcgacgccatcttccatgaaggagcctgctcatcc
accaccgagtgggacggcaagtacatgatggataataactatcagtactccaaagaagtg
ctgcactactgtctggagcgcggtatcccgttcctgtacgcctcttccgctgctacctac
ggtggtcgtaccgacaattttgtggaagaccgccagtacgaacaaccgctcaacgtctac
ggttactccaagttcctgttcgaccagtatgtgcgtgatattctgccgcaggctgattcg
cagatttgcggcttccgctactttaacgtctacggaccacgcgaaagccacaaaggcagc
atggcaagcgtcgcgttccacctgaacaaccaaatcaatcagggcgaaaaccctaaattg
ttcgctggcagtgagaacttcaaacgtgacttcatctatgtcggtgacgtcgccgccgtc
aatctgtggttctggcagcacaacgtttccggcattttcaactgcggtaccggcaacgcc
gaatccttccaggcggtagcggacgccgtgttggcctggcacaacaaagaccaggtggaa
tacatccccttcccggaaaaactgaaaggtcgttatcaggcctacacgcaagcagacctg
accaacctgcgcgcggcgggttacgacaaaccgttcaaaaccgtcgcacaaggggtcgcc
gactatatggcctggctgaaccgtaaagcctga
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