Dickeya zeae: W909_01105
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Entry
W909_01105 CDS
T03567
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dzc
Dickeya zeae
Pathway
dzc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dzc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
W909_01105 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dzc03021
]
W909_01105 (rpoB)
03400 DNA repair and recombination proteins [BR:
dzc03400
]
W909_01105 (rpoB)
Enzymes [BR:
dzc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
W909_01105 (rpoB)
Transcription machinery [BR:
dzc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
W909_01105 (rpoB)
DNA repair and recombination proteins [BR:
dzc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
W909_01105 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AJC64778
LinkDB
All DBs
Position
236814..240842
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIS
SYSGSSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYSTEEILDLFFDKVVYEIHNNKLQME
LVPERLRGETASFDIEADGKVYVEKGRRITARHIRQLEKDGIERIEVPVEYIAGKVLAKD
YVDESTGEVIAMANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYMSETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL
SKEDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEIHYLSAIEEGNYVIAQANTNLDDEGHFIDELVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEEEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHDVLVAGGVEADKLDKLPRERWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQHQEVAK
LREFIQRAYDLGNDVRQKVDLNTFSDEEVLRLAENLKKGMPIATPVFDGAKENEIKELLK
LGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttgggaaacgtccacaa
gttctggatatcccatatctcctttctatccagcttgactcgttccagaagttcatcgag
caagatccggaaggtcagtatggtctggaagctgcattccgttccgtattccctatctca
agttacagcggcagctctgaactgcaatatgtcagctaccgtctgggtgagccggttttt
gacgttcaggaatgtcaaatccgtggcgttacctactccgcgccgctgcgcgtaaaactg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagacatcaaagaacaa
gaagtgtacatgggcgaaatcccgctcatgaccgacaacggtacctttgttatcaatggt
actgagcgcgttatcgtttctcagttacatcgtagtcctggcgtcttctttgacagcgat
aagggtaaaacccactcttccggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcctggctggactttgaattcgacccgaaagacaacctgtttgtccgtatcgaccgt
cgccgtaaactgccggctaccatcattctgcgcgcattgaattactccaccgaagaaatt
ctggacctgttcttcgataaagtggtgtatgaaatccacaacaataagttgcagatggaa
ctggtgccggagcgtctgcgtggcgaaaccgcctcgttcgacatcgaagctgacggtaaa
gtctacgttgagaaaggtcgccgtatcactgcgcgccatatccgtcagttggaaaaagac
ggtatcgaacgtatcgaagtaccggttgaatacatcgcaggcaaagtgctggcgaaagac
tatgtggatgaaagcaccggtgaagtgatcgcgatggcgaacatggagctgtcgctggat
ctgctggctaaactgagtcagtccggccacaagcgtattgaaacgctgttcaccaacgat
ctggatcacggcccgtacatgtccgagaccgtgcgtgttgacccaaccaacgatcgcctg
agcgcgctggttgagatctaccgcatgatgcgtcctggtgagccgccgacacgtgaagct
gccgaaacgctgttcgaaaatctgttcttctctgaagatcgctatgatctgtcagcggtt
ggccgcatgaagttcaaccgctctttgctgcgtgaggaaatcgaaggttccggtatcctg
agcaaagaagacattatcgatgtgatgaaaaagctcatcgatattcgtaacggtaaaggc
gaagtcgacgatatcgaccatctgggcaaccgtcgtatccgttctgtcggtgaaatggcg
gaaaaccaattccgcgttggtctggtgcgtgttgagcgtgcggtgaaagagcgtctgtcc
ttgggcgacctggatacgctgatgccgcaggacatgatcaatgccaaaccgatttctgct
gcggtgaaagagttcttcggttccagccagctgtctcagtttatggaccagaacaacccg
ttgtctgagattacgcataaacgccgtatctccgctctcggccctggcggtttgacccgt
gaacgtgctggcttcgaagtgcgtgacgtacacccgactcactacggtcgtgtatgtcct
atcgaaacgccggaaggtccgaacatcggtcttatcaactcgctgtccgtgtatgcacag
actaacgagtatggtttcctggaaaccccgtaccgccgtgtacgcgatggcgtggtcact
gacgaaattcattacctgtcggcgatcgaagaaggcaactacgttattgctcaggcgaac
accaacctggatgacgaaggccacttcatcgatgaactggttacctgccgtagcaaaggc
gaatccagcttgttcagccgtgatcaggttgactacatggacgtttccacccaacaggtg
gtctccgtgggtgcttcactgatcccgttcctggaacacgatgacgccaaccgcgccctg
atgggtgcgaacatgcaacgtcaggcggttccgaccctgcgtgctgacaagccgctggtg
ggtaccggtatggaacgtgctgttgccgttgactccggtgtaactgcggttgctaaacgc
ggtgggaccgtgcagtacgtcgatgcttctcgtatcgttatcaaagttaacgaagaagag
atgtatccgggcgaagcaggtatcgatatctacaacctgaccaaatacacccgttccaac
cagaacacctgtatcaaccagatgccatgtgtgtcactgggtgagccggttgagcgcggc
gacgtgttggctgatggcccgtctaccgacctcggtgaactggcgctgggtcagaacatg
cgcgtagcgttcatgccgtggaacggttacaacttcgaagactccatcctcgtttccgag
cgtgtagtacaggaagaccgttttaccactatccacattcaggaactggcgtgtgtgtcc
cgtgacaccaagctggggccagaagagatcacggctgatatcccgaacgtgggtgaagcg
gcactctccaagctggatgaatccggtatcgtttacatcggtgcggaagttaccggcggc
gatatcctggtcggtaaagtgacgccgaaaggcgaaacgcagctgacgccggaagagaaa
ctgttgcgtgcgatcttcggtgagaaggcgtctgacgtgaaagattcttctctgcgtgtg
ccgaacggcgtttccggtacggttatcgacgtacaagtctttacccgcgatggcgtggaa
aaagacaaacgtgcgctggaaatcgaagaaatgcagctcaagcaggccaagaaagacctg
actgaagaactgcagattctggaagccggtctgtttgcccgtatccatgatgtgttggtt
gccggtggcgttgaagccgacaaactggacaagctgccgcgcgagcgttggctggaactg
ggtctgaccgacgaagagaagcagaaccagctggagcagttggctgagcagtacgacgag
ctgaaacacgaattcgagaagaaactcgaagccaaacgtcgcaaaatcactcagggtgat
gatctggcaccgggtgtgctgaagatcgttaaggtgtatctggcggttaaacgtcagatc
cagccgggtgacaagatggcaggtcgtcacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccttacgacgagaacggcacgccggtcgacatcgtactgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagattctggaaacccacctgggtatggca
gcgaaaggcatcggcgacaagatcaacgccatgctcaagcagcatcaggaagtggccaaa
ctgcgtgagttcatccagcgcgcttatgacctgggcaacgatgtacgccagaaagttgac
ctgaacaccttcagcgatgaagaagttctgcgtctggcggagaatctgaagaaaggtatg
ccgatcgccacgccggtgttcgacggtgccaaggaaaacgagatcaaagagttgctgaaa
ctcggtgatctgccgacttccggtcagattacgttgttcgacggccgtactggcgagcag
tttgagcgtccggttaccgtgggctacatgtacatgctgaaactgaaccacttggttgat
gacaagatgcatgcccgttcaaccggctcttacagcctggttacccagcagccgttgggt
ggtaaggcgcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgctggaagct
tacggcgcagcctataccctgcaggaaatgctgacggtgaaatccgatgacgtgaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgatcaccggatggaaccgggtatgccg
gagtccttcaacgtattgttgaaagaaatccgctccctgggtatcaacatcgagctggaa
gaagagtaa
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