Dickeya zeae: W909_03110
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Entry
W909_03110 CDS
T03567
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dzc
Dickeya zeae
Pathway
dzc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dzc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
W909_03110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dzc03019
]
W909_03110
03016 Transfer RNA biogenesis [BR:
dzc03016
]
W909_03110
Enzymes [BR:
dzc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
W909_03110
Messenger RNA biogenesis [BR:
dzc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
W909_03110
Transfer RNA biogenesis [BR:
dzc03016
]
Prokaryotic type
tRNA degradation factors
W909_03110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_2
OB_RRP5_4th
aRib
S1_RRP5
KH-I_KHDC4-BBP
DUF4172
Spt6_S1
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
AJC65147
LinkDB
All DBs
Position
657886..660006
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AA seq
706 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLT
VNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVA
GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENIKSLTAEAGKPKWNWQAPEVNV
ELHNRVQALSEARLGDAYRITEKQERYAQVDTIKADVVAALLAEDETLDENELRDILGSI
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEA
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD
ILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST
DGEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATAQPQETTPVSEAE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgctaaatccgatcgttcgtaaattccagtacggtcaacataccgtaacactggaaacc
ggcatgatggctcgtcaggccactgccgctgttatggttagcatggatgacaccgcagta
tttgtaactgttgtgggtgccaaacacgctaaaccgggccaggattttttcccgctgact
gttaactatcaagagcgtacctacgctgctggtcgtatccccggtggtttcttccgccgt
gaaggccgtccgagcgaaggcgaaacgctgatttcccgtttgattgaccgtccgattcgc
ccgctgttcccagatggtttcgttaacgaagtccaggttatcgccactgtggtttccgtg
aatccgcaggttaacccggatatcgttgccatgatcggtgcttctgcggcgctgagtctg
tcgggtatcccgttcaatggcccgattggtgccgctcgcgttggttacatcaacgatcag
tacgtgctgaacccgacgaccgaagagctgaaaaccagccgtttggatctggtcgtcgct
ggtactgaaggcgcggtactgatggtggaatccgaagcagacctgctgagcgaagatcag
atgctgggtgcagtggtattcggtcatgatcagcaacaggttgttatcgagaacatcaag
tcactgacggcagaagcgggtaaaccgaagtggaactggcaggcgccggaagtgaacgtc
gaactgcacaaccgtgtgcaggcgttgtctgaagcgcgtctgggtgacgcttatcgcatc
actgaaaaacaggaacgctacgcgcaggtcgataccatcaaagctgacgtggttgcagcc
ctgctggcagaagatgaaacgctggacgaaaacgaactgcgtgacatcctcggcagcatc
gagaaaaacgtggtacgtagccgtgtgctgcgtggcgaaccgcgtatcgacggtcgcgaa
aaagacatgatccgtggtctggatgttcgtactggcgtgctgccgcgtactcacggttct
gcgctgttcacccgtggtgaaactcaggcgttggttaccgcgacactgggcaccgagcgt
gatgcacagaccattgatgaactgactggtgagcgtactgatcgcttcctgctgcactac
aacttccctccgtactctgtaggtgaaaccggtatggttgggtcgccgaagcgccgcgaa
atcggtcacggtcgtctggctaaacgtggtgtgctggctgttatgccgaaaccggaagcc
ttcccgtacaccgtacgtgttgtgtctgaaattaccgaatccaacggttcttcttccatg
gcttccgtctgtggtgcttcgctggcgctgatggatgcaggcgtgccgatcaaagcggct
gttgccggtatcgcgatgggtctggtgaaggaaggcgacaactacgttgtcctgtctgat
attctgggtgacgaagaccacctgggcgatatggacttcaaagtagccggtagccgtgaa
ggcgtgaccgcgttgcagatggacatcaaaatcgaagggatcacccgcgaaatcatgcag
gtggcgctgaatcaggccaagggtgcgcgtttgcacattctgggtgtgatggaacaggct
atcagcacgccgcgtggcgatatctccgaattcgcaccgcgtatccacaccatcaagatc
agcactgacaagatcaaagatgtgatcggtaaaggcggttctgttatccgtgcgctgact
gaagaaaccggtacgactatcgagatcgaagatgacggtacggtgaagatcgcctcgacc
gacggcgaaaaagcgaaacacgcgattcgtcgtatcgaagagatcacggctgaaatcgaa
gtgggccgcatctatcagggcaaagtgactcgtatcgttgactttggcgcgtttgttgcc
atcggtggcggtaaagaaggtctggtacatatttctcagatcgccgacaagcgtgttgag
aaagtgaccgactatctgcagatgggccaggaagtaccggttaaggtactggaagtggac
cgtcagggtcgtatccgtttgagcataaaagaagcaactgctcaacctcaggaaaccaca
ccggtttctgaggcagaataa
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