Dickeya zeae: W909_03320
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Entry
W909_03320 CDS
T03567
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dzc
Dickeya zeae
Pathway
dzc03410
Base excision repair
dzc03430
Mismatch repair
dzc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dzc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
W909_03320
03430 Mismatch repair
W909_03320
03440 Homologous recombination
W909_03320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dzc03400
]
W909_03320
DNA repair and recombination proteins [BR:
dzc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
W909_03320
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
W909_03320
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
W909_03320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AJC65182
LinkDB
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Position
699606..701336
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AA seq
576 aa
AA seq
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MNVVTQLRRRPVAETELPDSLPALLRRLYAQRGVRQAQELERSLRGLLDYRLLSGISQAV
DVLCRALAEERRIVIVGDFDADGATSTALTVLALRSMGGREVQYLVPNRFEDGYGLSPEV
VAQAAAKGAELIVTVDNGISSHAGVDDAHRRGIEVVVTDHHLPGDTLPAAEAMVNPNLVD
CAFPSKALAGVGVAFYLMMALRARLRESGWFTERGLAEPNLAELLDLVALGTVADVVPLD
ANNRILVAQGLSRIRVGKCRPGIRALLEVSNRDAAQLVATDLGFALGPRLNAAGRLDDMS
VGVELLLCHDIVQARMLASDLDALNQSRREIEAGMQVEALQLCEQLERSRDTLPLGLAMY
HPDWHQGVVGILASRIKERFHRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCYPG
LMLKFGGHAMAAGLSLVEDRFDEFRQRFADLVGEWLDASQLEGVVWSDGELAVPELSLGT
AEMLREAGPWGQAFPEPLFDGRFRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTVL
WPDSSVREVELAYKLDVNEFRGKRSVQLLIEHLWPL
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgttgttacccaactccgtcgccgtccggtggcggagacggagttacctgactcc
ctcccggcactattacgtcgtttatacgcccagcgcggtgtgagacaggcgcaggaactg
gagcgcagtctgcgcggcctgttggattatcgtctgctgagcggtatttctcaggccgtc
gacgtgttgtgtcgggcgctggcggaagagcgccgcattgtgattgtcggtgattttgac
gctgacggtgccaccagtaccgcgctgacggtgctggcgctgcgcagtatgggagggcga
gaggttcagtatctggtgcccaaccgtttcgaagatgggtatgggctcagtcccgaagtg
gtcgctcaggcggctgccaaaggggcggagttgatcgttaccgtcgataacggcatttcg
tcccacgctggggtggatgatgcgcaccggcgaggtatcgaggtggtggtgactgaccac
catttgccgggggacaccctgccagcggcagaggcgatggtgaatcctaatctggtggat
tgtgcgtttccgtcgaaggcgttagccggcgtgggcgtggcgttctacctgatgatggcg
ttgcgggctcgcctgcgtgagtctggctggtttactgaacgcgggctggccgagcctaat
ctggcggaattgctggatttggtggcgttggggacggtggcggatgtagtgccgctggac
gccaataaccgtattctggtcgcacagggactgagccgcattcgggtcggaaaatgtcgg
ccggggatccgcgctttgctggaagtctctaaccgcgatgccgcccaactggtagccact
gatttgggctttgcgctcgggccgcgcctgaatgctgccggtcgactggacgatatgtcc
gtcggggttgagctgttgttgtgccatgacatcgtgcaggcgcggatgctggccagcgat
ctggatgcgctcaaccaaagtcgccgtgagattgaagcggggatgcaggtagaagcgttg
cagttgtgcgaacaactggagcgtagccgcgatacgttgccgctggggctggcgatgtac
cacccggattggcaccagggcgtggtgggcattctggcgtcgcgcatcaaagagcgtttt
catcgcccggtgattgcgtttgcaccggcgggcgacggcattctgaaaggctccgggcgc
tctatcgccgggctgcacttgcgtgacgcgctggagcgactggatacctgttatcccggc
ctgatgctgaagtttggcggtcatgcgatggcggcgggactgtcactggtcgaagatcgc
tttgacgagtttcgccagcgttttgccgatctggttggcgagtggctggatgcttcacag
ctcgaaggtgtggtgtggtcagatggcgaattagccgtgcctgagttgtcgcttggcacc
gctgaaatgctgcgtgaggccgggccgtgggggcaggcttttcctgagccacttttcgat
ggccgttttcgcctgttgcaacaacggctggttggtgaacgccatctcaaggtcatggtg
gagccgctgggtggcggcccgctgttggatggcatcgcgtttaatgtggataccgtgctg
tggcctgacagcagcgtgcgtgaagtcgaactggcctataaactggatgttaacgaattc
cgcggcaaacgctcggtacaactgctgatagagcacctgtggccgctgtag
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