Dickeya zeae: W909_08335
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Entry
W909_08335 CDS
T03567
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
dzc
Dickeya zeae
Brite
KEGG Orthology (KO) [BR:
dzc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dzc03009
]
W909_08335 (rimO)
Enzymes [BR:
dzc01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
W909_08335 (rimO)
Ribosome biogenesis [BR:
dzc03009
]
Prokaryotic type
ribosomal protein modification factors
W909_08335 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
CLP1_P
YajR_YAM
NTPase_1
Methyltransf_2
Motif
Other DBs
NCBI-ProteinID:
AJC66068
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Position
complement(1832316..1833719)
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AA seq
467 aa
AA seq
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MTVNTFDPTQTTTLSAPQKALNDQSTDASKELSRKIGFVSLGCPKNLVDSERILTELRTE
GYQVVPSYNDADLVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKENQIREVH
PKVLEITGPHSYEQVLNHVHHYVPKPEHDPFTSLVPAQGVKLTPRHYAYLKISEGCDHRC
TFCIIPSMRGDLDSRPIGSVLDEAKRLAEAGVKELLVISQDTSAYGADVKHRTGFWNGQP
VKTSMVSLCEQLSTLGLWVRLHYVYPYPHVDDVIPLMAAGKVLPYLDIPLQHASPKILKL
MKRPGAVERTLERIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLQEAQLDRVGCF
RYSPVEGAAANNLPDQVPEDVKEERYHRFMQVQQQISSQRLQAKVGRELKVLIDEVDKEG
AIGRSMADAPEIDGAVYLNGENRVKVGDLVTVKIEHADEYDLWGSLV
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgactgttaacaccttcgatcccacacaaaccaccacactgtcggcaccgcaaaaagcg
ctgaatgatcaatccactgacgccagcaaagagttgtcccgcaaaattggctttgtcagc
ctcggttgcccgaaaaatctggtggattcggagcgaattctgaccgaactgcgtaccgaa
gggtatcaggtggtgccaagctacaacgatgccgatctggttatcgtcaatacctgcggt
ttcatcgatagcgcggtacaggagtcgctggaagccattggcgaagcgctcaatgaaaac
ggcaaagtcattgtgaccggttgtctgggggcgaaagagaatcagatccgtgaggtccac
cccaaagtactggaaatcaccggcccacatagctacgagcaagtgctcaaccacgtgcat
cattatgttcccaaaccggaacatgacccgtttaccagtctggtaccggctcaaggggtc
aaactgacaccacgccactacgcttacctgaagatttccgaaggctgcgatcatcgttgt
accttctgtattattccgtccatgcgtggtgatttggatagccgtcctatcggttcggtg
ctggatgaagccaaacgactggcggaagccggtgtgaaagaactgttggtcatctctcaa
gacacctctgcctacggtgctgacgtcaaacaccgtaccgggttctggaacggtcagccg
gtgaaaaccagtatggtcagtctgtgtgagcaattatcgacgctggggctgtgggtccgt
ctgcactacgtgtatccctacccgcatgtggatgatgtgatcccactgatggcagcaggc
aaagtgttgccgtatctggatatcccgctgcaacacgccagcccgaaaatcctcaagctg
atgaaacgccccggtgcggtagaacgcacgctggagcgcatcaagcgctggcgcgagatc
tgcccggacctcaccttgcgttcaacgtttatcgttggcttccccggtgaaacggaagag
gacttccagatgctgttggatttcctgcaagaagcacagttggatcgcgtagggtgtttc
cggtatagcccggtggaaggtgcagcggcgaacaacctgccagatcaggtaccagaagac
gtgaaagaagagcgttaccatcgtttcatgcaggtacagcagcagatttccagccagcgt
ctacaggccaaagtcggccgggaattgaaagtgttgatcgacgaggtggacaaagaaggt
gcgatcggtcgcagcatggcggatgcgccggagatcgacggggcggtgtatctgaacggt
gaaaaccgggtcaaggtgggcgatctggtgacagtcaaaattgaacatgccgatgaatat
gatctgtggggttcactggtctaa
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