Dickeya zeae: W909_10025
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Entry
W909_10025 CDS
T03567
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
dzc
Dickeya zeae
Pathway
dzc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dzc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
W909_10025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dzc03400
]
W909_10025
Enzymes [BR:
dzc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
W909_10025
DNA repair and recombination proteins [BR:
dzc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
W909_10025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AJC66384
LinkDB
All DBs
Position
complement(2215358..2219056)
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AA seq
1232 aa
AA seq
DB search
MTASALPSALDVLRFPLCGSRLIEASAGTGKTFTIAMLYVRLVLGHGGEHAFSRPLNPPD
ILVVTFTDAATRELRDRIRARLAQAAAYFQPGDKDSLAGEDDKIDPLLRDLRADYPLAQW
PDCARKLQLAAEWMDEAAVSTIHSWCNRMLGEHAFDSGSLFNQTLETDQSELLLEVVRDY
WRTFFFPLDASDVLELRDSWAAPEDFYRSVVPLLDYADEIGIDDLPAQIFSTVRDEKTRQ
LAALKAPWTQWCDELRDLLNAAVAEKKADGRKLQARYFDPWLDKLQHWASSDETTLDIGT
GWTRLTPQGLRECWKIPDEAPTHPALSAMETLAQQLSDLPEPRSQLLRHACRWIHQRFRS
EQESRAQMGFQDLLTRLDAALRGDNGERLAQRIRRQFPVAMIDEFQDTDPLQYRIFDTLY
RVATNDPQQGLILIGDPKQAIYAFRGADIYTYLRARRDTDGRHYTLGTNFRSTQAMVDAV
NQVFMQAENRANGAGAFLFRQPEGDNPVPFLPVQANGRDDLWMQEGTPAAALTCWMLETD
EPLSSSEYRQRMAAGCAREMVRLLQQGEQGQAGFVSSDQRWRPVKPGDMAVLVNSGREAM
AVRAHLSARGVRSVYLSDRESVFDSPQAGELHCWLAACADPENDRLLRAALATPLLGLSW
QALDRLNHDEQEWEHRVMQFVRYQQCWRQQGVLPMLRRLLWEFDVPRRLLVADNARALTD
VLHLSELLQQASVHLDGEHALIRYLAEQCQADNPSSDSLKVRLESDADLVKVVTVHKSKG
LEYPLVFLPFACAFRTVSHRDVPLKFHDDDGQLHLELIASDEAVARADHERLGEDLRKFY
VALTRARYALWLGIAPLKGLEKSAPGYLLGAGEPLEAGQLASCLSLWGGPHSQIAPLPEG
DDAVYRAVRETPALGNEPPLPDIRRHRWRITSYSGLQLAPEGQYQERRESAAHDAAAAEV
QSARQETFSEPQDAAERLPPLPTGYDMYSFPRGAVPGSFLHGLLEWAGKEGFAALAMDRP
RVEDQVARRCNRQGWTPWIPMLTDWLMAQLNQPLALPASPAGTVSLAGLTQYQVEMEFWF
ALNQVDTQRLDQQVSTATLAGAPRAPLMRDALNGMLKGFIDLVFEHQGRYYVLDYKSNWL
GADAADYDSARMARAMLDHRYDLQLALYLFALHRLLRSRLPDYDYDRHVGGALYLFLRGS
QAPGGGVYAERPDRALIDSLDRLFSGDTEVTA
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgagcgcgttaccttctgcgctggatgtactgcgctttccactctgcggcagt
cggttaattgaagccagcgccggtaccggcaaaacctttaccatcgccatgctgtatgtg
cggctggtgttgggacatgggggtgagcacgccttctcgcgtccgctcaacccgccggac
attctggtggtgacctttaccgatgccgcgacccgcgaactgcgtgaccgtattcgcgcc
cggttggcacaggccgcggcttactttcagccgggcgacaaggacagcttggcgggtgag
gatgacaagatcgatccgctactgcgcgatctgcgcgccgactacccattggcgcagtgg
ccggattgcgcccgcaaactgcaactggcggcggaatggatggatgaagcggcggtgtcc
accatccacagttggtgcaaccggatgctgggcgaacacgcgtttgatagcggcagcctg
tttaatcagacgctggaaaccgaccagagcgaattgctactggaggtggtgcgtgattac
tggcgcaccttctttttcccgctcgatgccagtgatgtgctggagctacgcgatagctgg
gccgcaccggaagatttttatcgcagcgttgtgccgttgctggactatgccgatgagatt
ggcattgatgacctgcccgcgcagatcttcagcaccgtgcgtgatgaaaaaacacgccaa
ctggcggcgctgaaagcgccctggacacaatggtgcgacgagctgcgcgacctgctgaac
gccgccgtggcagagaaaaaagcggatggccgcaagctacaggcccgttatttcgacccg
tggttggataaactgcaacactgggccagcagtgacgagacgacgctggatatcggcacc
ggctggacacggctgacgccacaagggttacgggagtgctggaaaataccggacgaagca
ccgacacatccggcgttaagcgcgatggaaacgctggcgcagcagttgagcgacttgccg
gagccacgtagccaactgttacggcacgcctgccgctggatacaccagcgttttcgctcc
gaacaggaaagccgggcgcagatgggctttcaggacttgctgacccggctggatgccgca
ttacgcggcgataacggcgaacgactggcccaacgcattcgccgccagttcccggtggcg
atgatcgatgaatttcaggataccgacccgctgcaataccgcattttcgataccctgtac
cgggtggcaaccaatgatccgcaacaggggttgatcctgataggcgacccgaaacaggcg
atttacgcgtttcgtggtgccgatatctacacctatttgcgcgcccggcgcgataccgac
ggtcggcattacacgctggggaccaactttcgttccacgcaggcgatggtcgatgccgtt
aatcaggtgtttatgcaagcggaaaaccgtgccaacggcgcaggtgcgtttctatttcgt
cagccagagggcgacaacccggtgccgtttttaccggtgcaggccaacggtcgtgatgac
ctctggatgcaggaaggaacgccagccgcggcattgacctgctggatgctggaaaccgat
gaaccgctgtcgtcgtctgaataccgtcagcgaatggcggcggggtgcgcacgtgaaatg
gtgcgactgttacaacagggcgagcaggggcaggccggttttgtctcgtcagaccaacgc
tggcgtccggttaaaccgggcgatatggcggtgctggttaatagcgggcgcgaggcgatg
gccgtgcgggcgcacctgtccgcgcgcggtgtgcgcagtgtgtatctgtctgaccgggag
tcggtatttgatagcccgcaggcaggagaactgcactgctggttggccgcctgtgctgac
ccggagaacgaccggttgctacgcgccgcgctggccacgccgttactggggctgagctgg
caggcgcttgaccgccttaaccacgacgagcaggagtgggaacaccgggtgatgcaattt
gttcgctaccagcaatgctggcgtcagcaaggcgtgttgccgatgctacggcggttgcta
tgggagtttgatgtcccgcgtcggttgctggttgccgataacgcccgggcgttgaccgat
gtgctgcacctgtcggagttactgcaacaggccagcgtgcatctggacggcgaacacgcg
ttgatccgctatctggctgaacagtgccaggccgataaccccagcagcgatagcctgaaa
gtgcggctggaaagtgacgcggatctggtcaaagtggtgaccgtgcataaatcgaaaggg
ctggagtacccgctggtgtttctgccgttcgcctgtgcgttccgcacggtcagccatcgg
gatgtgccgctgaaatttcatgatgatgacgggcaactgcaccttgagttgattgccagc
gacgaggcggttgcgcgtgctgaccatgagcgcctgggggaagacctgcgtaagttttat
gtcgcattgacccgtgcgcgctatgcgctgtggcttgggatcgcgccgttgaaagggctt
gagaaaagcgcgcccggttacctgctcggtgccggtgaaccattggaggccgggcaactg
gcgtcatgcttgtcgctctggggcgggccacacagccagatagcgccactgccagaaggc
gatgacgcggtatatcgcgcggtacgggaaacccccgcgctgggaaacgagccgccgtta
ccggatattcgccgtcaccgttggcgcatcaccagttattccgggctgcaactggcaccg
gaggggcagtatcaggagcgacgtgagtccgctgcccatgacgccgctgctgctgaagta
cagagcgcccggcaggaaacctttagcgaaccgcaggacgccgcagaacgtctgccgcca
ttgccgaccggctacgacatgtacagttttccgcgcggtgcggtgccgggcagttttcta
catgggctgctggagtgggcgggtaaagaggggtttgccgctctggcaatggatcgcccg
cgagtggaagatcaggtggcgcgacgctgtaaccgacagggctggacaccgtggataccg
atgctgactgactggctgatggcgcaactcaaccaaccgctggcgttgcccgcatcaccc
gctggtacggtgtcactggctggtctgacgcagtatcaggtggaaatggagttctggttt
gcgctcaatcaggtcgatacgcaacgtctggaccaacaggtcagcaccgccacactggcg
ggggcaccacgcgcgccgctgatgcgtgacgcgctcaatggcatgctgaaaggctttatc
gatttggtgtttgaacatcaggggcgctactacgtgctggattacaagtccaactggctg
ggggcggacgccgccgactatgactcagcgcgtatggcgcgcgccatgctagaccatcgg
tatgatctgcaactggccttgtacctgtttgccttgcaccgcttactacgctcacgactg
ccagattatgactacgaccgtcatgtcggtggggcgttgtatctgttcctgcgcggtagt
caggcaccggggggcggtgtttacgctgaacgaccggatcgggcgctgattgattcgctg
gaccgcctgtttagcggtgatacggaggtaacggcatga
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