Dickeya zeae: W909_11525
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Entry
W909_11525 CDS
T03567
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dzc
Dickeya zeae
Brite
KEGG Orthology (KO) [BR:
dzc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dzc03016
]
W909_11525
Enzymes [BR:
dzc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
W909_11525
Transfer RNA biogenesis [BR:
dzc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
W909_11525
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AJC66669
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Position
2548231..2550162
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AA seq
643 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGIVKATDKGFGFLEADAQKSYFIPPPHMKKVMHGDRI
IVTLHTEKEREIAEPESLVEPFLTRFVGRVQKKDDRLSIVPDHPLLKDAIPCRPARGVEQ
DFKEGDWAVAEMRRHPLKGDRGFFADLTQYITTGDDPLAPWWVTLSRHNLEREAPNADAA
ELDDGALEREDLTGLDFVTIDSASTEDMDDALYVQDNGDGTLEMTVAIADPTAYVRADSE
LDSIARQRAFTNYLPGFNIPMLPRHLSDDICSLRPNERRPVLACRMTVAADGALSQIRFF
AAWIESRAKLVYDEVSDWLEQRGDWQPQSDNIASQIRLLHRVCQARSAWRSTHALVFRDR
PDYRFLLGEKGEVLDIVTEPRRIANRIVEEAMIAANVCAAQVLRDTVGFGIYNVHTGFDP
VSIDQAVAVLESNGIHAEAQQLLTLEGFCILRRELDAQPTQFLDSRIRRFQTFAEISTAP
GPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAVITHTAADKPQDEVTQQLAERRRLNRMA
ERDVSDWLYARFLKDKAGTDTRFTAEIMDVNRGGLRVRLLENGASAFIPASFIHAVRDEL
VCSQETGIVTVKGEPVYRQSDSLTVVLTEVRLETRSIIAKPAA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgcttgcgcagcttaaacagcaactccactctcagacgcca
cgagcggaaggtatcgtcaaagccaccgacaaaggatttggttttcttgaagccgacgcg
cagaagagctatttcatcccgccgccgcacatgaagaaagtgatgcacggcgaccgcatc
atcgtcacgctgcataccgaaaaagagcgcgaaatcgcggagccggaatcgctggtggag
ccgtttctgacccgctttgtcggccgggtacagaaaaaagatgaccgcttgtctatcgtg
ccggatcatccgttgctgaaagacgccattccgtgccgcccggcgcgtggcgtcgagcag
gactttaaagaaggcgattgggcggtcgcggaaatgcgccgtcatccgttaaaaggcgat
cgtggtttctttgctgacctgacccagtacattactaccggcgatgacccgctggccccc
tggtgggtgacgctgtcgcgccataatctggagcgcgaagcgccgaatgccgacgcggcc
gaactcgacgacggggcgcttgagcgtgaagacctgaccgggctggactttgtcactatc
gacagcgccagcaccgaagacatggatgacgccttgtacgtgcaggacaacggcgacggt
acgctggagatgacggtggctatcgccgacccgaccgcttacgtgcgtgccgatagcgaa
ctggacagcattgcccgtcaacgtgcgtttaccaactatctgcccggctttaacattccg
atgctgccgcgccacttgtcagacgacatctgctcgctgcgcccgaacgaacgccgtccg
gtgctggcctgccgcatgaccgtcgccgctgatggcgcactgagccagattcgcttcttt
gccgcctggatcgaatcgcgcgccaaactggtgtacgacgaggtgtcggactggctggag
cagcgtggcgactggcagccgcagagcgataacatcgccagccaaatccgtctgttgcat
cgcgtgtgtcaggcgcgcagtgcctggcgctccacccatgcgctggtgttccgcgaccgc
ccggattatcgcttcctgttaggcgagaaaggtgaagtgctggatatcgttaccgaacca
cgtcgtatcgctaaccgcatcgtggaagaagcgatgatcgccgccaacgtctgcgcggca
caggtactgcgcgataccgtcggtttcggcatttacaacgtccacaccggcttcgatccg
gtcagtattgaccaggcggttgccgtgctggagagcaacgggattcatgctgaggctcag
caactgctgacactggaaggtttctgtatcctgcgtcgtgaactggatgcccaaccgacc
cagttcctcgatagccgtatccgtcgtttccagacatttgcagaaatcagcaccgctccc
ggtccacactttggcctgggtctggaggcttacgccacctggacgtcaccgattcgtaaa
tacggcgatatggttaaccatcgtctgctcaaggctgtcatcacccataccgcggcagac
aaaccgcaggatgaggtcacgcagcagttggctgaacgtcgtcgtcttaaccgtatggcc
gagcgtgacgtcagtgactggttgtacgcccgtttcctgaaagacaaagccggtaccgac
acccgctttaccgccgagattatggatgtcaatcgtggcggcttgcgtgtacgtctgctg
gaaaacggcgcatctgccttcattcctgcctcgtttatccacgcggtacgcgacgaactg
gtttgcagtcaggaaaccggcatcgtgacggtgaaaggcgaacccgtctatcgccagagc
gattccctgacggtggtattaaccgaagtgcggcttgaaacgcgcagcattatcgccaaa
cccgccgcctaa
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