Dickeya zeae: W909_12135
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Entry
W909_12135 CDS
T03567
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dzc
Dickeya zeae
Pathway
dzc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dzc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
W909_12135 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dzc03019
]
W909_12135 (rne)
03009 Ribosome biogenesis [BR:
dzc03009
]
W909_12135 (rne)
Enzymes [BR:
dzc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
W909_12135 (rne)
Messenger RNA biogenesis [BR:
dzc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
W909_12135 (rne)
Ribosome biogenesis [BR:
dzc03009
]
Prokaryotic type
rRNA processing factors
W909_12135 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AJC66780
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All DBs
Position
2682162..2685437
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AA seq
1091 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYNSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLELPDGMGLIVRTAGVGKSADAL
QWDLAFRLKHWEAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILELA
KEHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLREAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKREAVNAIEKRQGGVRAIIVPHDGME
TPHYAVLRIRKGEEKQTLSYMLPQLLEAEAQQATEEQVSERRAPEQPALASFTMTDISPE
EAQPVPVTPPPSVEKPAASERGLFGRFIGALKGMFSSSDAVKDKPAEAAKTESDEQEQEQ
KQDRRNNRRQSGRRDRPRDNREPRERDEQRRNKRPQQQNADVDTTAVAETSVQDKAVRDE
QRREQRAERQRRRQEEKRQAQNDVKELNAAAVEAEDTVAAEQEKPVQVMARRQRRQLPQK
VRVDDGSATGESAVANVDALPLAISYVQESPLEKAPESATSAADVTDTENEVAAESNREN
SLPRRSRRSPRHLRVSGQRRRRYRDERYPAQSPMPLAQASASPEMASGKVWVRYPVAQSQ
QPERVEELNMPANEQLSAAPALATALTALPDVTTPDITAQDVTTALDSAPASASVEENPT
AVPVLASTQQDEALAAQATQTVESTVQQAATAPLEVQEPTPQVEEPVAPVVEHVEVVEHV
EVVAHIEVEHVEETPAAVVADNATTASADESVDAQPAEPAPVIHAAVDVIPVPVAQEPVS
ALAPVNTTVAAQPHQHYATAPMTRAPAPVYIPDAPRVSNWQRPVFEFTGKGSAGGHSAVN
QASAPATRPVE
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaagagttgcgtgttgccttggttgat
ggtcagcggctctacgatctggatattgaaagccctggacacgaacagaaaaaggcgaac
atttacaaaggcaaaatcacccgcattgaacccagccttgaagccgcttttgttgattat
ggtgcagagcgacatggcttccttcccctcaaagaaatcgcacgcgaatacttccctagc
aattacaactctcacggtcggccgaatatcaaagacgtgctccgtgaaggccaggaagtt
atcgttcaggtggacaaagaagagcgcggcaacaaaggggctgccttaacgacgttcatc
agtctggccggcagctatctggtgctgatgccaaataacccccgcgctggcggcatttcc
cgccgtattgagggggatgaccgtaccgaattgaaagaagcgcttggctcactggagctg
ccggatggtatgggccttatcgtccgtactgccggggtgggtaaatccgccgacgcatta
cagtgggacctggcgtttcgtctgaaacactgggaggccatcaaaaaagccgcagaaggc
cgctcagccccattcctgattcatcaggaaagcaatgtgattgtccgcgcgtttcgtgat
tacctgcgcccggatatcggtgaaatcctgatcgataaccccaaaattctggaattggcc
aaagagcatatcgctgcgctgggccgcccggatttcagcagtaaaataaagctgtatacc
ggtgaaattccgctgttcagccattatcaaattgagtcgcaaattgagtccgccttccag
cgtgaagtgcgtctgccatccggcggctctatcgtcatcgataccaccgaggcgttgacc
gctatcgatatcaactccgcccgtgcaacacgcggcggcgatattgaagagaccgcgttt
aacaccaacctggaagccgccgatgaaattgcccgtcagttacgtttgcgtgacctgggt
ggtttgatcgttattgacttcatcgacatgacgccagttcgccatcaacgcgaagtggaa
aaccgcctgcgtgaagccgtccgccaggaccgtgcccgtattcagattggccgcatttcc
cgctttggtttgctggagatgtctcgccagcgcctgagtccttcactgggtgaatccagc
catcatgtctgccctcgctgtaatggcaccggtacgattcgcgacaacgaatcgctgtcg
ctgtctatcctgcgattgattgaagaagaggcgctgaaagaaaacaccaaagaggtgcat
gcgattgtaccggtgcctatcgcgtcttatctgctcaacgaaaaacgtgaagccgtcaac
gcgattgaaaaacgtcagggcggtgtacgcgccattatcgtcccgcacgacggtatggaa
acgccgcactacgccgtattgcgtatccgtaaaggtgaggaaaaacagactctaagctat
atgttgcctcagttgctggaagctgaagcccagcaggcaacggaagaacaggtttctgag
cgccgggccccggagcaaccggctctggcctccttcaccatgacggacatttcaccagag
gaagcccaacccgttcccgtcaccccgcccccgagcgtggaaaaaccggccgcttccgag
cgcgggttatttggtcgatttattggtgcgctgaaagggatgttctcctcttctgacgcc
gttaaagataaaccggctgaagcagcgaaaaccgagtctgatgagcaggagcaggagcag
aagcaggatcgtcggaacaatcgccgtcagtccggtcgacgtgatcgtccccgtgataat
cgcgaaccgcgtgagcgcgatgagcaacgccgtaacaaacgtccacagcaacaaaatgcc
gacgtcgatactaccgcggtagcagagacatccgtgcaggataaggcggtacgtgatgaa
caacgccgcgaacaacgcgctgaacgccaacgtcgccgtcaggaagaaaaacgccaggcg
cagaatgacgttaaagagctgaatgcggctgccgttgaagcagaagataccgttgctgcc
gaacaggaaaaaccggtacaagtgatggcgcgtcgtcaacgccgtcagttaccccaaaaa
gtaagggtggacgatggcagcgcgactggagagtcagcggtagcgaatgttgacgcgtta
cctctggcgatatcctacgtgcaggaatcaccgctagagaaagcgccggaatccgccacc
tctgccgccgacgttaccgatacagaaaacgaggtagcagccgaaagtaaccgtgaaaac
agcctgccgcgtcgttctcgccgctcacctcgtcatttgcgcgtcagtggtcagcgtcgt
cgtcgttaccgcgatgagcgttaccctgcacagtcgccgatgccgctggcacaagcgtcg
gcctcaccggaaatggcttcaggtaaagtctgggttcgttatccggttgcgcagtcacag
caaccagagcgtgtagaagagctgaatatgccggccaatgagcaactgtctgcagcaccg
gcactggccactgccctaaccgcgttacccgatgtaacgacaccggatatcactgcgcag
gacgtcacaactgctctggattcagcccctgccagcgcctcagtcgaggagaatccgacc
gcagtgccggtcctcgcatcaacacagcaggatgaagccttagccgcacaagctactcaa
accgtcgaaagcactgtacagcaggcagctacagcgcctctggaagtacaagagccgaca
ccgcaagttgaggagccggttgcgcctgttgtagagcacgttgaagtcgtagagcacgtt
gaagtcgtagcgcacattgaagtagagcacgttgaagaaacaccagctgccgtcgttgcc
gataacgccacgactgccagcgctgatgaatccgtggatgctcaacctgccgaaccagcg
ccggtgattcatgctgctgtagacgtgataccagttcctgtggctcaggaaccggtgtct
gcattagcacccgttaataccaccgtggcggcacagcctcaccagcattacgccactgca
ccgatgacacgtgcaccagcaccggtttatattccggatgcgccgcgtgtcagcaactgg
caacgcccggtgtttgagttcacaggcaaaggctctgctggcggtcactctgccgttaat
caggccagtgccccggcaactcgtcctgtggaataa
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