Dickeya zeae: W909_18435
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Entry
W909_18435 CDS
T03567
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dzc
Dickeya zeae
Pathway
dzc00040
Pentose and glucuronate interconversions
dzc01100
Metabolic pathways
dzc02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
dzc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
W909_18435
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
W909_18435
Enzymes [BR:
dzc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
W909_18435
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
AJC67947
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Position
4093814..4094941
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AA seq
375 aa
AA seq
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MKSFITPIAAGLLLAFSQSSLAADTGGYTKTDGGNVTGAVSKTATSMQDIVDIINAAKVD
ANGKKVKGGAYPLIITYTGNEDSLINAAAANICGQWSKDARGVEIKDFTKGITIIGANGS
SANFGIWIVNSSDVVVRNMRIGYLPGGAQDGDMFRIDNSPNVWLDHNELFAANHECDGTK
DGDTTFESAFDIKKGATYVTISYNYIHGVKKVGLAGFSSSDTAERNITYHHNVYNDVNAR
LPLQRGGNVHAYNNLYTNVTSSGLNVRQNGKALIENNWFENAVSPVTSRYDGSNFGTWVL
KNNNITKPADFATYNITWTADTKAYVNADSWTSTGTFPTVPYSYSPVSAQCVKDKLANYA
GVGKNLATLTSSACK
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcattcattactcccattgctgccggtctgctgctggcattcagtcaatccagc
ctggccgcggataccggcggttataccaaaacggacggtggtaacgtcacgggtgcggtc
agcaaaacggcgacgtccatgcaggacattgtggatatcatcaatgccgccaaagtggat
gccaacggtaagaaagtgaaaggcggtgcctatccgctgatcatcacctataccggtaac
gaagacagtctgatcaacgcggcagccgccaacatttgcggtcagtggagcaaagatgcc
cgtggcgtggaaatcaaagacttcaccaaaggtatcactatcatcggcgctaacggttct
tccgcgaacttcggtatctggatagtcaattcctccgacgtcgtggtacgcaacatgcgt
atcggctacctgccgggcggcgctcaggatggcgacatgttccgtatcgacaactcgcca
aacgtctggctggaccataacgagctgttcgctgcgaaccacgaatgtgacggtaccaaa
gacggcgataccacctttgaatccgccttcgatatcaaaaaaggcgcgacttacgtcacc
atctcctacaactacatccacggtgtgaagaaggtcggtctggcaggcttcagttcttct
gacaccgctgaacgcaacatcacttaccaccacaacgtttacaacgacgtcaacgcccgt
ctgccgttgcagcgtgggggtaatgtccatgcgtacaacaacttgtacaccaacgtcacc
agctccggcctgaacgtccgccagaacggcaaagcgctgatcgaaaacaattggttcgaa
aatgcggtaagcccggtaacgtcacgctatgacggcagcaatttcggtacctgggtactg
aaaaacaacaacatcaccaaaccggccgattttgcgacgtacaacattacctggacagcc
gacaccaaggcttacgttaacgccgacagctggacgtccaccggtactttcccgaccgtg
ccttacagctacagcccggttagcgcccagtgtgtgaaagacaaactggctaactacgcc
ggggtaggcaaaaacctggcaacactgaccagttcagcctgtaagtaa
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