Dickeya zeae: W909_19015
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Entry
W909_19015 CDS
T03567
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
dzc
Dickeya zeae
Pathway
dzc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dzc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
W909_19015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dzc03019
]
W909_19015
Enzymes [BR:
dzc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
W909_19015
Messenger RNA biogenesis [BR:
dzc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
W909_19015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CCDC138_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJC68056
LinkDB
All DBs
Position
4224800..4226086
Genome browser
AA seq
428 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPQVIEALENKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKT
LAFLASTFHYLLTHPAPAERQTNQPRALIMAPTRELAVQIHTDAEALAKATGLRLGLAYG
GDGYDKQLKVLEDGVDILIGTTGRLIDYTKQNHIHMGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPPTNQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILE
EFTQGNLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGASGFSISLA
CEEYALNLPAIEDYIGHRIPVSKYNSEALMTGLPEPKRLSRPRTSGGPRRPGAPRRSGAP
RNNRKRPG
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaaccgaacagaagttttccgacttcgcactgcatccgcaggtt
attgaagctcttgaaaataaaggctttcataactgcacgcccattcaggcgctggcgttg
ccgctaacgctgtcgggccgtgacgtggcgggacaagcgcaaaccggaacaggcaagacg
ctggcgtttctggcgtctacatttcattatttgctgacccaccccgctcccgctgaacgc
cagaccaatcaaccccgcgccctgattatggcgccgacccgtgaactggcggtgcagatc
cataccgatgctgaagcgctggcgaaagccaccggtctgcggttggggctggcttacggt
ggcgacggctacgacaagcagctaaaagtactggaagacggcgtcgatattctgatcggt
accaccggtcgtttaatcgattacaccaaacaaaaccatatccacatgggtgccatccag
gtcgtggtgctggatgaagctgatcgtatgtacgatctcggctttatcaaggatatccgc
tggttattccgtcgcatgccgccgactaatcagcgtctgaacatgctattttccgccacc
ttatcctatcgcgtgcgcgagctggcgttcgaacagatgaacaacgcagaatacgttgaa
gtggagccggagcagaaaaccggtcatcgcatcaaggaagagctgttctatccttccaat
gaagagaagatgcgcctgctgcaaacgttgattgaagaagagtggccagatcgctgcatc
atcttcgctaacaccaagcaccgttgtgaagagatttggggccacctggcggcggatggt
catcgcgtcgggctgctgaccggcgacgtagcacagaaaaaacggctacgcattctggaa
gaattcacccagggtaacctggatattctggtcgccaccgatgtggcagcacgcggcttg
catattccgttagtcacccacgtattcaactacgacctgcctgacgattgcgaggattac
gtccaccgcatcggccgtaccgggcgtgcaggtgccagcggcttctctatcagcctggcc
tgtgaagaatacgcgctgaatctgccagccattgaagactatatcggccatcgtatcccg
gtgagcaaatacaacagcgaagcactgatgaccggattgcctgagcctaagcgtctgagt
cgtccacgcaccagtggtggccctcgccgtcccggcgcgcctcgccgcagcggtgcgcct
cgtaacaatcgaaaacgaccgggttaa
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