Dickeya chrysanthemi: Dd1591_0013
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Entry
Dd1591_0013 CDS
T00930
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dze
Dickeya chrysanthemi
Brite
KEGG Orthology (KO) [BR:
dze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dze03016
]
Dd1591_0013
Enzymes [BR:
dze01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Dd1591_0013
Transfer RNA biogenesis [BR:
dze03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Dd1591_0013
Prokaryotic type
tRNA splicing ligases
Dd1591_0013
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
DUF4402
Motif
Other DBs
NCBI-ProteinID:
ACT04907
UniProt:
C6CFG6
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All DBs
Position
15836..17059
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AA seq
407 aa
AA seq
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MHNDYQVLDAPHGVPVKMWTHGVPVEPEAREQLLNTAKMPFIFSHLAVMPDVHVGKGSTI
GSVIPTRGAIIPAAVGVDIGCGMMAVRTSLLAADLPDNLLGIRSAIEQAVPHGRSVNRGG
RDKGAWHQPPPRVDAHWRQLDAGFKRITEHYPSLLKTNNYHHLGTLGTGNHFIELCLDEA
DRVWVMLHSGSRGIGNAIGNLFITLAQQDMRQHIANLPDRNLAYFAEGSRHFDDYMYAVG
WAQGYARHNREVMMEQVLQALAQAIPRPFTARQEAVDCHHNYVQQETHFGEPVLVTRKGA
VSAHRGQMGIIPGSMGAKSFIVRGLGNQESFCSCSHGAGRTMSRTAAKKRFTVEDHIQAT
VHVECRKDHDVIDEIPMAYKDIDAVMAAQASLVEIVHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgcataacgattatcaggtgctggatgcgccgcatggcgtaccggtaaaaatgtggacg
cacggtgttccggtcgagcctgaggcccgcgaacaattactgaatacggcgaagatgccg
tttattttcagtcatctggcggtgatgccggatgtccatgtcggcaaggggtctacgatc
ggcagtgttatccccactcgcggcgccatcattccggccgcggtgggggtggatatcggt
tgcggcatgatggcggtgcgaacctcgctccttgccgccgatttaccggacaatctgttg
ggtattcgcagcgccattgagcaggcggttcctcatgggcgtagcgtgaatcgtggtgga
cgggataaaggtgcatggcatcaaccgccgccgcgcgttgatgcccactggcggcaactg
gatgccgggtttaaacgtattaccgaacactatccgtcgttgctgaaaaccaataattac
caccacctgggtacgctcggaaccggtaaccactttatcgaattgtgtctcgatgaagcg
gatcgggtgtgggtgatgctgcacagcggttcccgtggtatcggcaatgccatcggcaat
ctgtttatcacgttggcgcagcaagacatgcggcagcatattgcgaatctaccggaccgt
aatttggcgtatttcgccgaaggtagccgtcatttcgatgactacatgtatgcggttggc
tgggcacaggggtacgcgcgccataaccgcgaggtgatgatggaacaggtgctgcaggca
ttggcacaggcgatccccaggccgtttaccgcccggcaggaggcggtggattgccaccac
aattatgtgcaacaggaaacgcattttggcgagccggtgctggtcacgcgcaagggcgcg
gtatcggcccatcgcgggcagatggggattattcccggctcgatgggagcaaaaagtttc
attgtgcgtggtttgggtaatcaagagagcttttgttcctgtagccatggcgccgggcgc
accatgagccgaacggcggcaaaaaagcgatttacggttgaagaccacattcaggcgacg
gtgcatgtcgaatgtcgaaaggaccatgacgtgattgatgaaattcccatggcgtacaaa
gacattgatgccgtcatggcggcgcaagcgtcgctggtcgagattgttcacacgctgcgg
caggtggtgtgcgtaaaaggataa
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