Dickeya chrysanthemi: Dd1591_1647
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Entry
Dd1591_1647 CDS
T00930
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dze
Dickeya chrysanthemi
Pathway
dze03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dd1591_1647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dze03400
]
Dd1591_1647
Enzymes [BR:
dze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dd1591_1647
DNA repair and recombination proteins [BR:
dze03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Dd1591_1647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
HTH_53
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACT06500
UniProt:
C6CFF0
LinkDB
All DBs
Position
complement(1874881..1878333)
Genome browser
AA seq
1150 aa
AA seq
DB search
MMPEQYRYTLPGKAGEQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEI
QQFTGQPVITLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGTLILPVNTLMQKVCP
HAFLHGHALMLKKGQRLSRDTLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEP
FRIDFFDDEIDSLRLFDADTQRTLNEVEHIYLLPAREFPTDKNAIELFRSQWREQFDVRR
DAEHIYQQVSKGTLPAGIEYWQPLFFSQPLPALFSYLPSGTLLVNTGDIQQGAERFWQDV
QQRHASRGVDPMRPLLPPDALWLSVEGFFAELKHWPRVQLRQDTLPDKAANLNLGYQPLP
DLAVQHQHKSPLDTLRRFVEQFSGQVVFSVESEGRRETLQELLSRIKLSPTPVKRLEQAA
SPGCYLMIGASEHGFIDTLRQRALICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRP
GQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILHYAGEDKLYVPVSSLHLISRYAGGAEDS
APLHKLGGDAWTRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDRDQYQLFCQGFPF
DTTPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTT
LLAQQHFDNFRDRFANWPVRIDMLSRFRSQKEQAQVLEQTQDGKVDILIGTHKLLQSDVR
WRDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATP
PARRLAVKTFVREYDSLVVREAMLREILRGGQVYYLYNDVENIDKATQRLSELVPEARIA
IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPNANTIIIERADHFGLAQLHQL
RGRVGRSHHQAYAYLLTPNPKAMSSDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELL
GEDQSGQMESVGFSLYMDLLESAVESLKAGREPSLEDLISSQTDVELRLPALLPDDFIPD
VNTRLSFYKRIASAKNDGELDDLKAELIDRFGKLPDAARHLLLVAALRQQAQALGIKRVE
GNDKGGFIEFSQHNRVDPTYLIGLLQRDAKVYRLDGPTRLKFIKDLAGYPQRLTFITQLL
EEMTKHTSAA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgaacaatatcgctataccttgcctggcaaagccggcgaacaacgcctgctt
ggtcagcttaccggcgcggcttgcgccgtcgaatgcgcagaaatcgttgaacgtcatgcc
ggactggtggtgctgattacgcccgacatgcagaacgccctgcggttgcgtgacgaaatt
cagcagtttaccgggcaaccggtcatcacgctgcccgattgggaaaccctcccttacgac
agcttctcacctcaccaggaaattatctccgcccgtttatccacgctctaccagcttccc
tcgctgacgcgcggcaccttgatcctgccggtcaataccctgatgcagaaagtgtgcccg
cacgcgtttttgcacggccatgcgttgatgctgaaaaaagggcaacgcctgtcgcgcgat
acgctacgcaaccaactggagcaggccggttaccgtagcgtcgaccaggtgatggagcac
ggtgaatttgctacccgcggcgcactgctcgatctgttcccgatggggagcgaagagccg
ttccgtatcgattttttcgacgatgaaatcgacagcttgcggttgttcgacgcggatacc
caacgcacgttgaatgaagtcgaacacatttatctgttgccggcgcgggaatttccaacc
gacaaaaacgccatcgagctgtttcgcagccaatggcgcgagcagttcgacgtccggcgc
gacgccgagcacatctaccagcaagtgagcaaaggaaccctgcccgccggcatcgagtat
tggcagccgctgtttttcagccagccgctgccggcgctgttcagctatttgccgtccggt
acgttgctggtcaataccggcgacattcagcagggtgcggagcgtttctggcaggatgtt
cagcagcgccacgccagccgcggcgtcgacccgatgcgcccattgttgccgccggacgcg
ctgtggttatccgttgagggcttttttgccgaactcaaacactggccgcgggtacaactg
cgccaggatacgctgccggacaaagccgccaacctgaatctgggctatcagccgttgcct
gacctggcggtccagcatcaacacaaatcgccgctggatacgctgcgccggttcgtcgag
caatttagcgggcaggtggtgttttccgtggagagcgaaggtcgccgggaaaccttgcaa
gagttactgtcccgcatcaagttatcgccaacgccggtaaaacgccttgaacaagccgcg
tcgccgggttgctatttgatgataggcgccagcgagcacggttttattgataccctgcgt
caacgcgcgctgatctgcgaaagcgacctgctgggcgaacgcgtcagccgccgccgtcag
gacagccgccgcaccatcaataccgatacgttgattcgcaatctggcggaattgcgccca
ggccaaccggtggtacaccttgaacacggcgtcggccgttacgccgggctgaccacgctg
gaggccggcggtatcaaggcggaatacctgattctgcattacgccggcgaagacaagctg
tacgtaccggtatcctcattacaccttatcagccgttatgccggcggtgcggaagacagc
gcaccgctgcacaagttaggcggcgacgcctggacgcgagcacggcagaaagcggcggaa
aaagtccgcgacgtcgcggccgagttgctggatgtttatgcccagcgcgccgctcatacc
ggttttgcgtttaaacacgatcgggaccagtaccaattgttctgtcagggttttccgttc
gataccacgccggatcaagcgcaggccatcaatgcggtgctgagcgatatgtgccgcccg
ctggcgatggaccgattggtgtgcggcgatgtcggtttcggcaaaaccgaagtggcgatg
cgcgccgcgtttctggcggtagagaaccacaagcaggtggcggtactggtgccgacgacc
ttgctggcgcagcagcacttcgacaattttcgcgaccgtttcgccaactggccggtgcgc
attgacatgctatcccgctttcgcagccagaaagaacaggctcaggtgctggaacaaacg
caggacggcaaagtggatatcctgatcggtacgcataaattactgcaaagcgatgtccgc
tggcgggatttgggattgctgatcgtcgatgaagaacaccgattcggcgtgcgtcacaaa
gagcgcatcaaagcgatgcgcgccaacgtcgatattctgacgctcaccgccaccccgatt
ccacgcaccctgaacatggcgatgagcggcatccgtgatttgtcgatcatcgccacgccg
ccggcgcgccgcctggcggtgaaaacctttgtgcgcgagtacgatagtctggtggtgcgc
gaggcgatgctgcgtgaaattctgcgcggcggccaggtgtactacctctacaacgacgtc
gaaaatattgacaaggccacccagcgactgagcgagctggtgccggaagcgcgcatcgcc
atcggtcacggtcaaatgcgcgagcgcgatctggagcgggtgatgaacgacttccaccac
cagcgcttcaatgtactggtgtgtaccaccattattgaaacgggtatcgatattcccaac
gcgaataccatcatcatcgaacgtgccgaccatttcggcctggcgcaattgcaccagttg
cgcggccgcgtcgggcgttcccaccatcaggcttacgcgtacctgctgaccccgaatccc
aaagcgatgagcagcgatgcgcacaagcgtctggaggctatcgcttcactggaagatttg
ggcgcagggtttgccctcgccacccacgatttggaaattcgcggcgccggcgaattgctg
ggggaagaccagagcggccagatggaaagcgtcggcttttcgctgtacatggacttgctg
gaaagcgcggtggaatcgctcaaagccggccgggaaccgtcgctggaagacttgatcagc
agccagaccgacgtcgagctacgcctgccggcgctgttgccggacgattttattcctgac
gtcaatacccgcctgtcgttctacaagcgtatcgccagcgccaaaaacgatggtgaactg
gatgacctgaaagcggaactgatcgaccgtttcggcaagctgccggatgccgctcgtcac
ttgctgctggtagcggcactgcgtcaacaggcacaagcgctgggtattaagcgggttgaa
gggaatgacaaaggggggttcatcgaattcagccagcataatcgcgtcgacccgacgtac
ctgatcggtctgttgcaacgcgatgctaaagtatatcgattggatggccctacccgattg
aaattcatcaaggatctggcgggatatccgcaacggctgacgtttatcacccagttgctg
gaagagatgacgaaacacacaagtgccgcctga
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