Dickeya chrysanthemi: Dd1591_3459
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Entry
Dd1591_3459 CDS
T00930
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dze
Dickeya chrysanthemi
Pathway
dze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dd1591_3459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dze03019
]
Dd1591_3459
03009 Ribosome biogenesis [BR:
dze03009
]
Dd1591_3459
Enzymes [BR:
dze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dd1591_3459
Messenger RNA biogenesis [BR:
dze03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dd1591_3459
Ribosome biogenesis [BR:
dze03009
]
Prokaryotic type
rRNA helicases
Dd1591_3459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACT08271
UniProt:
C6CJN9
LinkDB
All DBs
Position
complement(3929089..3930963)
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AA seq
624 aa
AA seq
DB search
MAEFETSFASLGLSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNIKADLKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVDLPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLGKLQPQEELDIET
LAAALLKMAQGERPLILPPDPVVERRPRREFRERDDRFERRGERNERGPRGGDERPARRE
RRDVGEMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG
DLLSHFTRTRILNKPMNMQLMGEAQPHERRERREGGERGERGARGFGDRAGSGRGRPFSG
ERREGGERRGNRDGQRAPRRFNDA
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtttgaaacctcttttgctagcttggggctgtctgctcctattctgaatgca
ctgtctgagatggggtatgaaaaaccgtccccgattcaggcggaatgtattcctcatctg
ctcaacgggcgcgacgtactgggtatggcgcagaccgggagcggcaagaccgcggcgttt
tccctgccgctgctgaacaatatcaaggctgacctgaaagcaccgcagttgctggtgctg
gcaccgacccgtgagctggcggtgcaggttgcagaagcctgtaacgaattttccaaacac
atgcagggcgtcaatgtggtcgcactgtatggcggccagcgttatgacgtgcagttgcgc
gcgctgcgccagggaccgcaggttgtcgtcggtacgccgggacgtttgctggatcacctg
aaacgcggtacgctggacctgtctaacctgagtggtctggtgctggacgaagccgacgaa
atgctgcgtatgggcttcatcgaagatgtagaaaacatcatggcgcagatcccggctgag
catcagacggcgctgttctccgctaccatgccggaggcgatccgtcgcattacccgtcgt
ttcatgaacgatccgcaggaagtgcgtattcaatccagcgtgacgacccgcccggatatc
agccagagctactggacggtatacggtatgcgtaaaaacgaagcgctgatccgtttcctg
gaagcggaagattttgatgctgcgatcatcttcgtgcgtaccaaaaacgctacgctggaa
gtggccgaagcgctggagcgcagcggttataacagtgccgcgctgaacggcgacatgaac
caggcgctgcgtgagcaaacgctggaacgtctgaaagacggtcgtctggatattcttatc
gcgaccgacgtggccgcacgtggtctggatgttgatcgtatcagcctggtggtgaactac
gatatcccgatggattccgaatcctacgtacaccgtatcggccgtaccggtcgtgccggt
cgtgccggtcgtgcgctgttgttcgtagaaaaccgcgagcgtcgcctgctgcgtaatatc
gaacgcaccatgaagctgacgatcccggaagtcgatttgccgaacgccgaactgctgggc
cagcgtcgtctggcgaagtttgccgctaaagtacagcaacagctggaaagcagtgatctg
gatatgtaccgtgcgctgctcggcaaattgcagccgcaggaagagctggatatcgaaacg
ctggctgccgcactgctgaaaatggcacagggtgaacgtccgctgattctgccgccggat
ccggtggttgagcgccgtccgcgtcgtgagttccgcgaacgtgatgatcgtttcgaacgc
cgtggcgagcgcaacgagcgtggcccgcgtggtggtgatgagcgtccggctcgtcgtgag
cgccgtgacgtgggtgaaatggatctgtatcggatcgaagtgggtcgtgacgatggcgta
gaagtgcgtcatatcgtgggcgcgattgctaacgaaggcgatatcagcagccgttacatt
ggtaacatcaaactgtttgcttcgcactccactatcgaactgccgaaagggatgccggga
gacttgctgtcgcactttactcgcacgcgtattctgaacaagccgatgaacatgcaactg
atgggtgaggcccagccgcatgaacgtcgcgagcgtcgtgaaggcggtgagcgcggcgaa
cgtggcgcccgtggattcggtgatcgcgccggcagcggccgtggtcgtccgttcagcggt
gagcgccgcgaaggtggcgagcgtcgcggtaaccgcgacggccagcgtgctccacgtcgt
ttcaacgatgcctga
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