Durio zibethinus (durian): 111276658
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Entry
111276658 CDS
T05242
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dzi
Durio zibethinus (durian)
Pathway
dzi03013
Nucleocytoplasmic transport
dzi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dzi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111276658
03015 mRNA surveillance pathway
111276658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dzi03019
]
111276658
Enzymes [BR:
dzi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111276658
5.6.2.5 RNA 5'-3' helicase
111276658
Messenger RNA biogenesis [BR:
dzi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111276658
mRNA cycle factors
Common to processing body (P body) and stress granule
111276658
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NPHP3_N
Helicase_RecD
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
111276658
NCBI-ProteinID:
XP_022718152
UniProt:
A0A6P5WR23
LinkDB
All DBs
Position
Unknown
AA seq
1262 aa
AA seq
DB search
MDSQFETASQPDPATDAYTFLEFNTQGESDFEYTDFRDPIRSWPTPSDASAVDRSGSDYH
SETAASSSPSSTSKGAGRGATSNNNSNSNSGAVTDALATGISGLNFEETVGDEDGAYEYG
KGDFAEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHK
DSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQWCPL
IDDRCFLQWLVKVPSEQEQLRARQITAQQINKVEELWKTNPDASLEDLEKPGVDDEPQPV
ALKYEDAYQYQNVFAPLIKLEADYDKIMKESQSKDNVTVRWDIGLNKKRVAYFVFPKEDN
EIRLVPGDELRLRYSGDAAHPAWQAVGHVIKLTAQEEVALELRASQGVPVDVSHGFSVDF
VWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNA
SQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEK
ISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSD
EKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLV
LGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEF
PSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAA
NVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQG
REKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTH
YKEHECLVEGPLNNLKQSMVQFQKPKKMYNDRRLFFGGGPGIVPNDNFGSPASSSPNADR
RSSRARGAYMPPGPPNGTHKPGAHPTGFPMARVPLPPFAGPPQPYAIPTRGAVHGPVGAV
PQVPQPGGRGFGAGRGNAGAPIGSHLPHQQGTQQNVGTIGSTFNFPPLENPNSQPSVGGP
LSQPGFVNNMPVQGPSQTFRDGFSKGGMSQDFLGDDFKSQGSHVPYTVADFSTQASQSGY
AVDYVTQGAQSGFPGNFLNQNSQAGYSRFGAGNDIMSQDYMNHGAQGLFTQVGFNDPTQD
DATQSHFGVANPNQLQSQGLMNSLYSQPFAHYNTLPLNLQAPQQQQPQQGQGSQNQKLHY
NG
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggattcccaattcgagacggcctcgcaacccgacccggctaccgacgcttacaccttc
ctggaattcaacacccaaggcgagtccgatttcgaatacacggacttccgcgacccgatt
cgttcttggccaacaccctccgacgccagcgctgtcgatcgctccggctccgactatcac
tcggaaactgctgcctcctcctctccctctagcacttcaaaaggcgctggccgtggcgca
acgagcaataacaacagcaatagcaatagtggtgccgtgactgatgctttagcgacgggg
attagtggattgaattttgaggagacggttggcgatgaggatggcgcttatgagtacgga
aaaggggatttcgcagagcacgcttgtcggtattgcggggtttcaaacccggcttgcgtg
gttcgctgtaacgttccttcatgcaggaagtggttctgtaattcaagagggaatacatcg
ggctcgcatattgttaatcatctcgtacgagctaagcacaaggaagtctgccttcataag
gatagtcctttgggagaaacaattcttgaatgctacaactgtggatgcagaaatgttttc
cttcttggttttatatctgctaagacagagagtgttgtcgttcttctttgtcgagaacct
tgtttgaatgttaacgctttgaaggacatgaattgggacttgagtcagtggtgtcccctt
attgatgataggtgctttttgcagtggctggttaaggtcccatctgaacaagagcagtta
agggcacgacaaataactgctcaacaaataaacaaggtagaagagctttggaagacaaat
cctgatgcctcccttgaagatcttgagaagcctggtgtagatgatgaacctcagcctgtg
gccttgaagtatgaagatgcttatcagtatcaaaatgtttttgcgccacttattaagctt
gaagctgactatgataaaataatgaaagaatctcaaagcaaggacaacgtcacagttcga
tgggatattgggttaaacaagaaacgtgttgcatattttgtcttcccaaaggaagacaat
gagattcgtttggtgccaggtgatgagttgcgactgcgttattcaggagatgctgcccac
ccagcatggcaggctgttgggcatgttatcaagctaacagcccaagaggaggttgcactt
gagcttcgtgctagtcagggagttcctgttgatgtgagccatgggttcagtgttgatttt
gtctggaagagtacaagcttcgaccggatgcagggagcaatgaaaacatttgcagtcgat
gaaacaagtgttagcggatatatttaccaccacctgctcggccatgaggttgaggttcag
atggttcgtaacacactgcctcgtcgttttggtgcacctggtctgccagagttgaatgca
tctcaagtttttgccgtaaaaagtgttcttcagaagcctataagtttgattcaaggaccc
cctggcacaggaaaaactgttacttctgctgccattgtatatcacatggctaaacagggt
caggggcaggttctggtctgcgctccaagtaatgtggctgttgatcagctagctgaaaag
ataagtgccactgggttaaaggttgtaaggctttgtgcaaaatcaagggaagctgtgagt
tctcctgttgaacatctgaccctacattatcaggtccgacatcttgacacttctgagaag
agtgagcttcacaagttacaacaattgaaagatgaacaaggtgagttgtcaagtagtgat
gaaaaaaagtacaaagcactgaagcgagcaacagagagggaaatatcccaaagtgctgat
gtcatttgttgcacttgtgtcggggctggagatcctagattggctaattttaggttccgc
caggtacttattgatgagtctactcaagcgacagagcctgagtgtctcattcctttagtt
ctaggagcaaagcaggttgttcttgttggtgatcattgccaacttggtccagttattatg
tgcaagaaagcagctcgtgctgggctagcgcagtctctatttgaacgtcttgttttgctt
ggtgttaagccaattagattgcaggttcaataccgtatgcacccatgtttgtcagagttt
ccttctaacagcttctatgaaggcacattgcaaaatggagtgacaatcaatgaaaggcaa
tcatctggcatagattttccttggcctgtgcctaatcgtccgatgtttttttatgtacag
atgggtcaagaggagattagtgctagtggaacatcatatctcaatcgaactgaggctgca
aatgttgaaaagattgttaccacattcttgaggagtggtgttgttcctagtcagattggg
gttataacaccttatgagggacagagggcatatattgtgaattatatgtcaagaaatggt
gccttgagacagcagctttacaaggaaattgaggttgcgagtgttgattcattccaaggg
cgggaaaaagattacatcatcttgtcttgtgtgagaagtaatgaacatcagggtattgga
tttctaaatgatcctcgcaggcttaatgtcgccctaacacgtgctcgatatggtattgta
attcttggaaaccctaaagttcttagcaaacaacctctgtggaatggtttattgacacat
tacaaggagcatgagtgcctggttgaaggacccctcaataacttgaagcagagtatggtt
caattccaaaagcccaaaaagatgtacaatgaccggagacttttcttcggtggtggacct
gggattgtgcctaacgataattttggctctcctgcctcatctagtccaaatgctgataga
agaagcagtcgtgctaggggtgcttatatgcctcctggtccacccaatggtactcacaag
cctggagcgcaccctactgggttcccaatggctcgggttcctcttccaccatttgctggt
cctcctcagccttatgctattccaactcgtggagctgtacatggacctgtgggagctgtt
cctcaggtccctcaaccaggaggtcgaggctttggggctggacgtggtaatgctggtgca
cctattggcagtcatcttccgcaccagcaaggcacgcagcaaaatgttggaactattgga
tctacttttaacttccctcctctggagaatccaaacagccagccatctgtgggtggtcca
ttatctcaacctggatttgttaacaatatgcctgtccaagggccaagccaaacatttcgt
gatggattttcaaaggggggaatgtcccaggacttcttgggtgatgacttcaaaagccaa
ggctcacatgttccttataccgttgctgatttttcaactcaagcttctcagagtgggtat
gctgttgattatgttacacaaggagcacagagtgggtttccagggaacttcctaaaccag
aattctcaagctggatattctcgttttggcgctggaaatgatatcatgtctcaggactac
atgaatcatggagcacaaggcctgtttactcaggttggctttaatgaccctacacaagat
gatgcaacacagagccactttggtgtggctaatcccaaccagcttcagtctcagggcttg
atgaattctctctactcccagccctttgcccactacaacacgctgccactcaacttgcag
gctcctcaacagcagcagcctcaacagggccagggctcccaaaaccagaaacttcactat
aatggttaa
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