Durio zibethinus (durian): 111278828
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Entry
111278828 CDS
T05242
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dzi
Durio zibethinus (durian)
Pathway
dzi03013
Nucleocytoplasmic transport
dzi03015
mRNA surveillance pathway
dzi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dzi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111278828
09122 Translation
03013 Nucleocytoplasmic transport
111278828
03015 mRNA surveillance pathway
111278828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dzi03019
]
111278828
03041 Spliceosome [BR:
dzi03041
]
111278828
Enzymes [BR:
dzi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111278828
Messenger RNA biogenesis [BR:
dzi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111278828
Spliceosome [BR:
dzi03041
]
Complex C
Other components
EJC/TREX
111278828
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111278828
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
111278828
NCBI-ProteinID:
XP_022721225
UniProt:
A0A6P5WYM1
LinkDB
All DBs
Position
Unknown
AA seq
465 aa
AA seq
DB search
MGDIKDNDAYEEELLDYEEEDEKAPDSVSAKAADSAKKGYVGIHSSGFRDFLLKPELLRS
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVL
CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVSIKVHKDLLKNECPHIVVGTPGRILGL
SRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVNR
AAELNKLLVECNFPSICIHSGMTQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQARFEVDIKELPEQID
TSTYRSIINCICYLPGLTDHNLYYCKSTAKCVQRSKLWSCWQWPY
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatataaaagataacgacgcctacgaggaagagcttctagattacgaagaagaa
gatgaaaaagcccctgactccgtctccgctaaggctgctgattctgctaagaaggggtat
gttggaattcacagttcgggattcagagacttcctgctgaaaccagagctgcttcggtct
attgtggattctggatttgaacatccttctgaagtgcaacatgagtgcatccctcaagct
attcttggaatggatgtgatttgccaagcaaaatctgggatggggaaaacagctgttttt
gttctatcaactcttcagcaaatcgagccggttgctggtcaagttgcagcactcgttcta
tgccatacaagagaattagcttaccagatttgccatgaatttgagaggttcagtacttat
ttaccagatattaaagtagctgtcttctatggtggagtcagtatcaaggttcacaaggac
ttattaaagaatgaatgtcctcatattgttgttggaacgcctggaaggatattgggtctt
tccagggataaagatcttagtttgaagaatgtgaggcattttatacttgatgaatgtgac
aagatgcttgagtcacttgatatgaggagagatgtgcaagagatcttcaagatgactcca
catgataagcaagttatgatgttttcagctacacttagcaaggaaattcggcctgtgtgc
aagaaatttatgcaagatcccatggaaatttatgttgatgatgaagccaaattgactcta
catggtctggtacagcattatattaaattgagtgagctagagaagaaccgcaagttgaat
gacctccttgatgccttagatttcaaccaagtagtcatttttgtcaaaagtgtgaacaga
gcagctgagctcaacaagttactagtggagtgtaatttcccctctatctgcatccactct
ggaatgacccaggaagaaaggttgacacgatacaagagtttcaaggaagggcacaaaaga
attcttgtcgcaacagatttagttggaaggggaattgatattgagcgtgttaatattgta
atcaactatgacatgccggactctgctgatacctacttgcatagggtgggtagagctggt
agatttggcaccaaggggcttgcaattacgtttgtctcatctgcatctgactctgatgtc
cttaatcaggttcaggctaggtttgaggtggatataaaggagcttcctgagcaaattgat
acctctacatacagatccatcatcaattgcatatgttatttgcctggtctcactgatcac
aatttgtattactgcaaaagcacagcgaaatgtgttcaacgttctaagttatggagctgc
tggcaatggccttactga
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