Durio zibethinus (durian): 111287945
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Entry
111287945 CDS
T05242
Name
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
dzi
Durio zibethinus (durian)
Pathway
dzi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dzi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111287945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dzi03019
]
111287945
Enzymes [BR:
dzi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
111287945
Messenger RNA biogenesis [BR:
dzi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111287945
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
LMWPc
Motif
Other DBs
NCBI-GeneID:
111287945
NCBI-ProteinID:
XP_022734375
UniProt:
A0A6P5Y1V0
LinkDB
All DBs
Position
Unknown
AA seq
744 aa
AA seq
DB search
MAQKPKTTSHPISPSKTPHHHHTRRCCCHHHALMNTTNHWPRRALFLSRVLSRAFSTTPT
PSSTFPLKHVTRSNFDSVLVELRSHVRAADFVAIDMEMTGVTSASWRESFEFDRFDIRYL
KVKDSAEKFAVLQFGVCPFRWDSFKXIFIAQPHNFFVFPRQEIQLDGPSYEFLCQTTSVD
FLAKHLFDFNACIHEGVSYLSRGQEDEARKRLKSLYGDQLTNPSHDFRETMDLPLVRVAD
VLFAERMKKRLSEWRDELLQHRVSGSQGHGVSDDLNQQFQTVFFKMRPALSLNGFTSHQL
SLIRMVTRKHFKDLTYVHFNGESSSQELVVYTDSESDKDRLVEEVKKEHHRRAEMKINAA
VGFRHVIDLLSSENKLIVGHNCILDIAHMHSKFLGPLPLTAEEFVSCINKYFPNIIDTKI
LLNADYTLQRQIKKSSTSLSSAFSLLCPEIAHGFKSKLLPSQPYVKVEVHVDDMRSSDWN
SGAKHEAGYDAFMTGCVFAQACSHLGIDFQLHSPSENLAQNEKLQKHVNLLYLSWINGDI
IDLRTGNQTAELLGSNIKRKRFPPVLFENSVLIWGFPSQLKPGVIRECICKTLGPTSVIS
IYRIDQTAVFVQFSKSELVSDFLILKESLEQTNDAISVLHPLSQLLEGGNTYAARYETYK
EICASPMSEVLFADQAEAVGIKWKTESIPSNVGENASDTPEAVEKSKRRKTEDVGNDSSK
KQLTCDEIIDSFLKVEKIRRTTNL
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggcccaaaaacccaaaaccacatctcatcctatatccccttctaaaaccccccaccac
caccacacccgccgctgctgctgccaccatcatgctctcatgaacaccacaaaccactgg
cccaggcgggccttattcctctcacgtgtcctatcacgtgccttctccaccactcccaca
ccttcctcaacgttccctctgaagcacgtgacacgatccaacttcgactccgtgctcgtt
gaactccgttctcacgtgcgagcagccgacttcgtggccatcgacatggagatgacgggg
gtcactagcgcttcatggcgggaatcattcgagtttgaccggttcgatattcggtatctt
aaagtgaaagattccgccgaaaaattcgctgttcttcagttcggcgtttgcccttttcgc
tgggattcatttaagncaatttttattgctcaaccgcacaatttctttgtatttcctcgt
caagagattcaacttgatgggccctcttatgaattcctctgccagacaacttctgtggat
tttttggctaaacacctgtttgatttcaatgcttgcatacatgaaggagtatcttactta
tccagaggacaagaagatgaggcccgaaagagattaaaatcactgtatggagatcagtta
actaatccgtcgcatgattttagagaaacaatggacttgccattggtccgagtggcagat
gttctcttcgctgaaagaatgaagaaaagattgagtgaatggcgtgatgagttgttacaa
catagggtcagtgggtctcaaggtcatggggtttcggatgacttaaatcaacaatttcaa
acagttttcttcaagatgcgtcctgctctgagtttgaatggattcacttctcatcaactt
agtctgattcgaatggtcacaaggaagcatttcaaagatcttacttatgttcatttcaat
ggtgaaagttcctcacaagaattagtggtttatacagattcagagagtgataaggataga
cttgtggaggaggtgaagaaagagcatcacagaagggcagaaatgaagataaatgctgca
gtggggtttcgtcatgtgattgatctcctttcctcagaaaataagttgattgttggtcac
aactgcatcctagatattgctcacatgcacagcaaattcctaggtcctcttcctttgact
gctgaagaatttgtctcctgcattaacaagtacttcccaaatatcattgacaccaaaata
ctattgaatgctgactacacattacaacggcagataaagaaatctagcacatcattatcc
tcggcattttccttattatgcccagaaattgctcacgggtttaaaagtaaacttctgcct
tctcagccatatgttaaagttgaagtccatgtggatgacatgaggtcctctgattggaac
tctggagccaagcatgaagctggctatgatgcttttatgacaggctgtgtgtttgcacag
gcgtgcagtcacctaggcattgattttcaacttcattcaccttctgaaaatcttgcccag
aatgaaaagctccagaagcacgtgaaccttctgtatctgagttggattaatggagacatt
atcgatctaaggactggtaaccagactgcagagttgttgggctctaatatcaaaagaaag
cgatttccaccagtcttatttgagaacagtgttttaatctggggattcccatcacagctg
aaacctggtgtgataagagaatgcatctgcaaaacccttggccctacctctgttatttcc
atctaccgtattgatcaaactgcggtcttcgttcaattcagcaagtcggagttggtatca
gactttctgattttgaaagaaagcctggagcaaactaacgatgcaatttcggttttgcat
cctctttcacaactattggaaggtggaaatacttatgccgctagatatgaaacttataaa
gagatctgtgcgtcacctatgtcagaagtgttatttgcagatcaagcagaggctgtaggt
atcaaatggaagaccgaatcgataccatccaatgtaggggaaaatgcatcggatacccca
gaggctgttgaaaaatccaagagaagaaagacagaggatgtagggaatgattcatcaaag
aaacagttgacatgtgatgagatcattgattcatttcttaaagtggaaaagattagaaga
accactaatttgtaa
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