Durio zibethinus (durian): 111288344
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Entry
111288344 CDS
T05242
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
dzi
Durio zibethinus (durian)
Pathway
dzi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dzi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111288344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dzi03019
]
111288344
Messenger RNA biogenesis [BR:
dzi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111288344
mRNA degradation factors
5'-3' decay
Decapping complex
111288344
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
111288344
NCBI-ProteinID:
XP_022734929
UniProt:
A0A6P5Y3C2
LinkDB
All DBs
Position
Unknown
AA seq
792 aa
AA seq
DB search
MDTSEDLMQFGDTSTGVAVFDASQYAFFGKDVLEEVELGGLDDEEDLPAVELDEEESLFD
QEGEVLRSLSDIDDLARTFSKLNTAVSGPRGTGIIGDRGSRESSSVTEWAQGEEFPYWLD
QQALETDSIPEGKRWSSQPSPNLDSKHLYRTSSYPEQQQLLQQHQHHQHFSSEPILVPKS
SYTSYPPPGGRSPQASPNQHSGHLNIPYMVGGSQMITSPNISAFSNSQLQMTGLHHGSHY
GGNMPQFAPGLSVDSQPSNQWGSQPKLYGGDNSCVLNNILQQQLSHQNGLIPPQLMPQLQ
VHPQRLQHPVQPSFSHLSGIQSQPFNPHLALSPPLMNKFEAILGIGDLRDQRPKSAQKGR
VNPRFYQQGFDSSGLKNDIGWPQFRSKFMSTDEIEGILRMQIAATHSNDPYVDDYYHQAC
LARKSAGAKLRHHFCPTHLRDRPPRACANTEPHAFLQVDALGRFPFSSIRRPRPLLEVDP
PNSSGVTNYDQKASDMPLEQEPMLATRVTIEDGLCLLLDVDDIDRFLQFNQLQDGGAQLR
QRRQVLLEGLAASLQLVDPLGKNGLTDEFAQKDDLVFLRMVSLPKGRKLLARYLQLLFPG
GELMRVVCMAVFRHLRFLFGSLPSDPGAAETTNNLARVVSSCVYGMDLRALSICLAAVVC
SSEQPPLRPLGSPAGDGASFILKSVLDRATKLMVDFRAAGNYNMTNQSLWKASFDEFFNL
LSKYCINKYDTVMQSLHMQVKPNMVIDESDATKAIKTEMPVDLLHACLPHINDQQKKLIL
DLSQQSMLVGRS
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggatacttctgaggatcttatgcaattcggtgatacttctacaggagttgcagtattt
gatgcatcacaatatgcattttttggaaaagatgttctcgaggaagttgaattgggggga
ttagatgatgaggaggatttacctgcagtcgaacttgatgaggaggagtctttgtttgat
caagagggtgaagtattgagatccttatcagacattgatgatcttgctagaacattttca
aagttgaacacagctgttagtggaccaagaggcacagggataattggtgataggggatcc
agagaaagttcgtctgttaccgagtgggcccagggggaggaatttccttactggcttgat
cagcaggctcttgaaactgatagtattcctgaaggcaaacgctggtcatcacaaccgtcg
cccaatttggactcaaagcatctttacaggacatcctcgtaccctgagcagcagcagctg
ctgcaacaacatcagcaccatcaacatttctctagtgaaccaattctagttccaaaatcc
tcttacacttcataccctccccctggtggcagatctcctcaagcttcaccaaaccaacat
tctggtcacctgaatattccatatatggttggtggatcacagatgataacttcgccaaat
atctcagccttctctaattctcagcttcaaatgacaggtttacatcatgggtcacactat
ggtgggaatatgcctcagttcgctcctggtctgtctgtcgatagtcagccatctaatcaa
tgggggagccagccaaaattatacggtggagataattcctgtgttttgaacaatatattg
caacaacaattatctcatcaaaatggtttaattccgccacaattaatgccacagctgcag
gtgcatccacagagactgcagcatcctgttcagccatcatttagccatttgtcagggatt
cagtcgcagccatttaatccgcatcttgctctgtccccacctctaatgaacaagtttgaa
gctatacttggtattggtgatctgagagatcaaagaccgaaatcagctcagaaaggtagg
gtgaatccacgattttatcagcagggctttgatagcagtggtttgaagaatgatattgga
tggcctcaatttagatccaaattcatgtcgactgatgagattgagggcattcttagaatg
cagattgctgcaactcacagtaacgacccttatgtggatgattattaccaccaggcttgt
cttgcaagaaaatctgccggagcaaagttgagacatcatttttgcccaactcatcttagg
gatcgacctccccgagcatgtgcaaatactgagccacatgcttttctccaggttgatgca
cttgggaggttccctttctcttcaattcgcaggcctcgtcctcttcttgaagttgaccct
ccaaattcatctggtgtcaccaactatgatcagaaagcttctgatatgcccctggaacaa
gaaccaatgcttgccactagagttacaatagaggatggtctatgccttctccttgatgta
gatgatattgatcgatttttacagtttaatcagttgcaagatggaggagcacaactgaga
caaagacgacaggttttgttggaagggctagctgcatcacttcaattggttgacccactt
ggcaagaatggcctcacagatgagtttgctcaaaaggatgatcttgtgtttttacggatg
gtttcccttcctaaaggacggaagctacttgcaaggtaccttcaacttctttttccaggt
ggtgagcttatgcgagttgtctgcatggctgttttccgtcatttaaggttcttgtttgga
agccttccctctgatccaggagcagcagaaactactaataaccttgcaagggttgtgtcc
tcatgtgtttatggcatggatcttcgtgcacttagcatctgtcttgcagctgtggtttgt
tcctcagagcagccacctcttcgtcctcttggaagtcctgctggagatggagcatctttt
attctgaagtctgttcttgatagggcaacaaaacttatggttgattttagagctgctggc
aattacaatatgaccaatcagtccctttggaaggcttcatttgatgagttttttaacctt
cttagcaagtattgcataaacaaatatgataccgtgatgcagtccttgcatatgcaggtc
aaaccaaatatggtgatagatgaatcagatgctaccaaagcaattaaaacagaaatgcca
gttgatctgctacatgcgtgtttaccccacattaatgaccagcagaaaaagctgatattg
gatctctctcagcagtctatgcttgtaggacggtcatga
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