Durio zibethinus (durian): 111289908
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Entry
111289908 CDS
T05242
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dzi
Durio zibethinus (durian)
Pathway
dzi03013
Nucleocytoplasmic transport
dzi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dzi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111289908
03015 mRNA surveillance pathway
111289908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dzi03019
]
111289908
Enzymes [BR:
dzi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111289908
5.6.2.5 RNA 5'-3' helicase
111289908
Messenger RNA biogenesis [BR:
dzi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111289908
mRNA cycle factors
Common to processing body (P body) and stress granule
111289908
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
NPHP3_N
nSTAND3
PhoH
ATPase
AAA_16
SRP54
AAA_22
GLUCM-like_C
Ribosomal_S13_N
AAA_25
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
111289908
NCBI-ProteinID:
XP_022737002
UniProt:
A0A6P5Y9C8
LinkDB
All DBs
Position
Unknown
AA seq
1267 aa
AA seq
DB search
MDSQFETASQPDPATDAYTFLEFNTQGESDFEYTDFRHPIRSWPTASDANAADRSSSDHH
LDSAASPSSSSAPKVAGRGATSNNNSNSNNISNSVAVVDALATGISGLNFEETVGDEDGG
YEYGKGNFAEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEV
CLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQ
WCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDE
PQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTMRWDIGLNKKRIAYFVFP
KEDNELRLVPGDELRLRYSGDAAHPAWQAVGHVIKLTAQEEVALELRVSQGAPVDVNHGF
SVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLP
ELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ
LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQLLKDEQGEL
SSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECL
IPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPC
LSEFPSNSFYEGTLQNGVTINERQLLGIDFPWPVPNRPMLFYVQMGQEEISASGTSYLNR
TEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVD
SFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNG
LLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPNDNFGSAASSSP
NADRRSSRAQGAYMPPGPPNGTHKSGMHPTGYPMPRLSLPPFPGPPSQPYAIPTRGVVHG
PVGAVPQVPQPGSRGFGAGRGNTGAPIGSHLPHQQGTQQNVGTIGSTFNFPPLENPNSQP
SVGGPLSQPGLVNNMPVQGPGQTFRDGFSMGGMSQDFLGDDFKSQGSHVPYNIADFSTQA
SQSGYAVDYVTQGAQSGFPGNFLNQNSQAGFSRFGSGNDFMSQDYMNHGSQGLFTQVGFN
DPSHDDASQSHFGVANPNQIQSQGMTNSPYSQPFAHYNTQRLNLQAPQQQQPQQGQGTQN
QKLHYNG
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaattcgagacggcctcgcagcccgatcccgccactgacgcttacaccttc
ctcgaattcaacacccaaggcgagtccgatttcgagtacaccgacttccgccacccgatt
cgttcttggccgacagcctccgatgctaacgccgctgatcgctccagctccgaccaccac
ttggactctgctgcctccccttcttcctctagtgctccgaaagtcgctgggcgtggggca
acgagcaataacaacagcaatagcaataatattagcaatagtgtagccgtggttgatgcg
ttagcgacggggattagtggattgaattttgaggagacagttggcgatgaggatggcggt
tatgagtacggaaaagggaatttcgctgagcacgcttgtcggtattgtggggtttcgaac
ccggcttgcgtggttcgctgtaacgttccttcctgtagaaagtggttttgtaattcaaga
gggaatacatcgggctcgcatattgttaatcatctcgtacgagctaaacacaaggaagtc
tgccttcataaggatagtcctttgggagaaacaattcttgaatgctacaactgtggatgc
agaaatgttttccttcttggttttatatctgctaagactgagagcgttgtcgttcttctt
tgtagagaaccttgtttgaatgttaatgctttgaaggacatgaattgggacttgagtcag
tggtgtccccttattgatgataggtgctttttacagtggctggttaagatcccatctgaa
caagagcagttaagggcacggcaaataagtgcccaacaaataaacaaggtagaagagctt
tggaagacaaatcctgatgcctcccttgaagatcttgagaagcctggtgtagatgatgaa
cctcagcctgtggccttgaagtatgaagatgcttatcagtatcaaaatgtttttgctcca
cttatcaagcttgaagctgactatgataaaatgatgaaagaatctcaaagcaaggacaat
gtcacaatgcgatgggatattgggttaaacaagaaacgtattgcatattttgtctttcca
aaggaagacaatgagctgcgtctagtgcctggtgatgagttgcgtttacgttattcagga
gatgctgctcatccagcttggcaggctgttgggcatgtgatcaagctaacggcacaagag
gaggttgcgcttgagctccgtgttagtcagggagctcctgttgacgtgaaccatgggttc
agtgttgattttgtctggaagagtacaagttttgaccggatgcagggggcaatgaaaaca
tttgcagtcgatgaaacaagtgttagtggatatatttaccatcacctgcttggccatgag
gttgaggttcagatggttcgcaatgcactgcctcgtcgttttggtgcacctggtctgcca
gaattgaatgcatctcaagtttttgccgtaaagagtgttcttcagaagcctataagcttg
attcaagggccccctggcacaggaaaaactgttacttctgctgccattgtatatcacatg
gctaaacagggtcaggggcaggttctggtctgtgctccaagtaatgtggctgttgatcag
ctagctgaaaagataagtgccactgggttaaaggttgtaaggctttgtgcgaaatcaagg
gaagctgtgagttctcctgttgaacatttgaccctgcattatcaggtccgacatcttgac
acatctgagaagagtgaacttcacaagttacaactattgaaagatgaacaaggtgagttg
tcaagcagtgatgagaaaaagtacaaagcactgaagcgagcaacagagagggaaatatcc
caaagtgctgatgtcatttgttgcacttgtgtcggggctggagatcctagattggctaat
tttaggttccgccaggtacttattgatgagtctactcaggcgacagaacctgagtgtctc
attcctttagttcttggagcaaagcaggttgttcttgttggtgatcattgccaacttggt
cctgttattatgtgcaagaaagcagctcgtgctgggctagcacagtctctgtttgaacgt
cttgttttacttggtgttaaaccaattagattgcaggttcaatatcgtatgcacccatgt
ttgtcggagtttccttctaacagcttctatgaaggcacattacaaaatggagtgacaatc
aatgaaaggcaattattgggcattgatttcccttggcctgtgcctaatcgtcccatgttg
ttttatgtacagatgggacaagaggagattagtgctagtggaacatcatatcttaataga
actgaagctgcaaatgttgaaaagattgttaccacattcttgaggagtggtgttgttcct
agtcagattggggtcataacaccttatgagggacaaagggcatatattgtgaattatatg
tcaagaaatggtgctttgagacagcagctttacaaggaaattgaggttgcaagcgttgat
tcgttccaaggacgggaaaaagattacatcatcttgtcttgtgtgagaagtaatgaacat
cagggtattggatttttaaatgatcctcgcaggcttaatgttgccctaacacgagctcga
tatggtattgtaattcttggaaacccaaaagttcttagcaaacaacctctgtggaatggt
ttattgacacattacaaggaacacgagtgcctggttgaaggacccctcaataacttgaag
caaagtatggttcaattccaaaagccaaaaaagatctacaatgataggagacttttcttt
ggtggtggacctgggattgtgcctaacgataattttgggtctgctgcctcatctagtcca
aatgctgatagaagaagcagtcgtgctcagggtgcttatatgcctccaggtccacccaat
ggcactcacaagtctggaatgcaccctactgggtacccaatgcctcggctttcacttcca
ccatttcctggtcctccttctcagccttatgctattccgactcgtggagttgtacatgga
ccagtgggagccgttcctcaggtccctcaaccaggaagtcgaggctttggggctgggcgt
ggtaatactggtgctcctattggcagtcatctcccgcaccagcaaggcacgcagcaaaat
gttggaactattggatctacttttaacttccctcccctggagaatccaaacagccagcca
tctgtgggtggtccattatctcaacctggacttgttaacaatatgcctgtccaagggcca
ggccaaacatttcgtgatggattttcaatggggggaatgtcccaggacttcttgggtgat
gacttcaaaagccaaggctcacatgtcccttataacattgcagatttttcaacgcaggct
tctcagagtgggtatgctgttgattatgttactcaaggagcacagagtgggtttccaggg
aacttcctaaatcagaattctcaagctggattttctcgttttggttctggaaatgatttc
atgtctcaggactacatgaatcatggatcacaaggcctgtttacacaggttggctttaat
gacccttcacatgatgatgcatcacagagccactttggtgtggctaatcccaatcagatt
cagtctcagggcatgacgaattctccctactcccagccctttgctcactacaacacacag
cgactaaacttgcaggctcctcaacagcagcagcctcagcaaggccagggcacccaaaac
cagaaacttcactataatggttaa
DBGET
integrated database retrieval system
