Durio zibethinus (durian): 111301338
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Entry
111301338 CDS
T05242
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
dzi
Durio zibethinus (durian)
Pathway
dzi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dzi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111301338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dzi03019
]
111301338
Enzymes [BR:
dzi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111301338
Messenger RNA biogenesis [BR:
dzi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111301338
mRNA degradation factors
3'-5' decay
Ski complex
111301338
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
AAA_22
PhoU
Motif
Other DBs
NCBI-GeneID:
111301338
NCBI-ProteinID:
XP_022752665
UniProt:
A0A6P5ZJT4
LinkDB
All DBs
Position
Unknown
AA seq
1345 aa
AA seq
DB search
MKPIQAANGFSFRVGFSGHSGHLRVEPLYTEERDNPIKALPDFVLPPAFPRETPESIKEH
IKEKYLLPRLDEDAFSPEKAERQWDFDWFDRVKIPLEPSLPRTVMVPVWELPFRRCKEGS
VEGKWEPSSVEVDVSELIVGGEASGSFPRMFGGAAKDFVRGSINNRPFRPGGLEDQSLER
ILPEGASNGEWVREVLNGGPAQTIPPGFKQGLNLGNLKAHPYLWNVYKDQSALNSTSVEK
LSELSVQFDDLFRKAWEEDVAEFEKDGHSTESDSVKSEAEANQGDVLNGPDTGSSALDEI
LSVEAERFDEKIYGGGQQQKEAWAVSGSSEEIVDKFHELVPDMAIEFPFQLDTFQKEAIY
YLEKGESVFVAAHTSAGKTVVAEYAFALSSKHCTRAVYTAPIKTISNQKYRDFCGKFDVG
LLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVI
IMLPRHINIILLSATVPNTKEFADWIGRTKQKEIHVTGTTKRPVPLEHCLFYSGELYKIC
ESETFMSQGLKAAKDAYKKKNSNAVSGGTGSSSGFSAVQDGPRGQKREISNRGKQNKHSG
PQNLGNYSGTGWGNQRTGGGQNSWGSRRSTWLLLIDKLSKKSLLPVVIFGFSKNQCDKSA
DSISGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVVRVQSLLCRGIGIHHAGLLPIV
KEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQVLPGEYTQMAGR
AGRRGLDKIGTVIVMCRDEIPEERDLKHIITGTPTKLESQFRLTYIMILHLLRVEELKVE
DMLKRSFAEFHAQKKLPEQQQLLMRKLAQPKKTIECIKGEPAIEEYYEMHAEAEEHDEQI
SKAVMQSPVVQQFLIHGRVVVVKSQSAQDHLLGVVVKSPSANNKQYIVLVLKPDEPSMTQ
TPSGSSNLQDKRSADFHQGYVLLPKSKRGLEEDYRVSAVPRKGSGIINITLPYQGAAAGV
SFEVRETDNTEFLCICNRRIKVDQVGLLEYGSNAAFSNTVQQLLKLKSNGNKYPPALDPV
KDLKLKDMDLVKTYYKWTHLLQKMSENKCHECIKLEEHIKLAREIKKHKEEVNALEFQLS
NEALQQMPEFQGRIDVLKEIGCIDENLVVQLKGRVACEMNSGEELICTECLFENQLDDLE
PEEAVALMSAFVFQQKNTSKPSLTSKLSQAKQRLYDTAIRLGKLQAEFKLQITPEEYVQE
NLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFKTAAAIMGNSSLY
KKMESASNAIKRDIVFAASLYITGV
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatccaagcggcaaatggattcagtttccgagtcggattctctggccacagc
ggccacctcagagtcgagcctctctacaccgaggagagagataaccctatcaaagccctc
cccgacttcgttcttccacctgcatttcccagggaaacgcctgaatcgattaaggagcat
ataaaggagaaatatctgttaccaagattagatgaggatgctttttctccagagaaagct
gaaaggcaatgggattttgactggtttgacagggtaaaaataccattggagccatcattg
ccgagaactgttatggtcccagtctgggagttacccttcagacgatgcaaggagggatca
gttgaaggaaagtgggaacctagttcagttgaggtggatgtgtcagagctaatagttggg
ggtgaagcgtctggttcttttccacgcatgtttggtggtgcagccaaagattttgtgaga
ggaagcattaataaccgcccttttcgtccaggaggcttggaggatcaatctttagagagg
attcttcctgaaggtgcatctaatggtgagtgggttagggaggtgctaaatggtggtcct
gctcagacaattcctccaggctttaagcaagggttaaaccttggcaatcttaaggcacat
ccttacttgtggaatgtttacaaggaccaaagtgcactcaatagcacatcagttgaaaag
ttgagtgagttgtctgtacaatttgacgacttgttcaggaaagcttgggaagaggatgtt
gcagaatttgagaaagatggacattcaacagaatcagattccgttaagtcagaagctgag
gcaaaccagggtgatgttcttaatggtcctgatactggatcatctgctttggatgagata
ttgtcagttgaagcagaaagatttgatgagaaaatttatgggggtggccagcaacaaaag
gaggcttgggctgttagtggaagtagtgaagagattgttgataaatttcatgaactagtt
cctgacatggcaattgaatttccttttcaattggatacattccagaaggaggctatttat
tatttagaaaagggggagtctgtttttgtggctgctcatacttctgctgggaaaacagtt
gttgcagaatatgcatttgctttgtcatcaaaacattgcactagagctgtgtatactgct
ccaattaaaacaatcagcaatcagaagtacagagatttctgtgggaaatttgatgttggc
cttctcacaggtgatgttagtttgaggccagaggcttcttgtctcatcatgacaactgaa
atattaaggtcaatgctttatcggggtgcagatattattcgcgatattgaatgggttata
ttcgatgaggtgcactatgtgaatgatgttgaaagaggtgtggtttgggaagaagtcata
atcatgcttccgaggcatattaatatcattctcctttctgccacggtgcctaatacaaaa
gagtttgctgattggattggtcggacaaagcaaaaggaaattcatgttaccgggacaaca
aaaagacctgtccctttggaacattgcctgttttattctggagaactttacaaaatatgt
gaaagtgaaacttttatgtcacaaggactaaaggctgctaaagatgcgtacaagaaaaag
aattccaatgcagtcagtggtggtactggttcatctagtgggttttctgcagttcaggat
gggcctcgaggtcagaaacgtgaaatttctaaccgagggaaacaaaataagcattctggt
ccacaaaacttgggaaattattctgggactggttgggggaatcaaagaactggaggtggc
cagaatagttggggctctaggagatcaacatggttgttgcttattgacaagctctcaaag
aagtcattattacctgtggttatatttgggttctcaaagaatcaatgtgataaatcagct
gacagcatctccgggactgacctcactagtagttctgagaaaagtgagattcgtgttttt
tgtgataaagctttttcacggctgaagggatctgatcgcaatttacctcaggttgtcaga
gttcagagccttctttgcagaggaattggcatacatcatgcaggtttgcttccaattgtt
aaggaagttgttgaaatgctcttctgtcgaggtgtgattaaggttttgttttcaacagag
acatttgcaatgggggtaaatgctccggccagaacggttgtctttgatacattaaggaag
tttgatggcaaggaatttagacaggtacttcctggggaatacactcaaatggcaggtcgt
gctggcagaagaggacttgataaaattggtacagtaatcgtgatgtgccgtgatgaaatt
ccagaagagagggatttgaaacatattataactggaactccaactaagcttgaatctcag
ttccgattgacatatattatgatcctgcatctccttcgtgtggaagaattgaaggtggaa
gacatgttgaaacggagttttgctgaatttcatgctcagaagaaacttccagagcagcaa
caacttctaatgcgaaagcttgcgcagccaaagaaaactatagaatgtattaaaggtgaa
ccggcaattgaagagtactatgagatgcatgcagaagctgaggaacacgatgaacaaata
tcaaaagctgtcatgcagtcccctgttgtccaacaatttcttatccatgggagagtggtt
gtggtgaaatctcaatcagcccaggaccatttactaggagttgtcgtgaaatcaccttct
gctaataacaaacaatatattgtgctagttcttaaacctgacgagccatcaatgactcaa
actccctcaggcagtagtaacttgcaagataagagaagtgccgatttccatcaaggttat
gtgctgctaccaaaatccaagcgtggtcttgaagaagactaccgtgtatctgctgtccca
cgtaaaggatcaggtatcatcaacataacactgccttaccagggtgctgctgcaggagtg
agttttgaggtcagagaaactgacaatacggaattcttatgcatatgcaatagaagaata
aaagtggaccaagttgggcttcttgaatatggtagcaatgctgctttctctaacactgtt
cagcagctgttgaaattgaagtctaatggaaacaaatatcctcctgccttagatccagtt
aaagatctgaaactgaaggatatggatcttgttaaaacatactacaaatggacccacctg
ctgcagaaaatgtcagagaataagtgccatgaatgtataaagttggaggagcatattaag
ttagctagagaaattaagaagcataaagaggaagttaatgctcttgaatttcaactatct
aatgaggcgctccaacagatgccagaattccagggccggattgatgttctgaaggaaatt
ggttgtatagatgaaaaccttgtggttcaactaaaaggtcgtgttgcctgtgagatgaat
tcaggggaggaattgatatgcacagaatgtttatttgagaatcaactcgatgacctggaa
cctgaagaagcagtagctttaatgtcggcctttgtgtttcagcagaagaacacttctaaa
ccttctcttacatccaagctctctcaggccaaacaaagattgtatgacacagctataaga
cttggtaagcttcaagcagagttcaaattacaaataacaccggaggagtacgtacaagaa
aatctcaagtttggtcttgttgaagtggtttacgaatgggcaaagggaactccttttgca
gacatatgtgagctcacagatgttcccgaaggccttatcgtgcggacaattgtcaggctg
gatgagacttgtcgtgagtttaaaactgcagcagctataatgggtaattcatctctttac
aagaaaatggaatctgcttccaatgccataaaacgtgatatagtcttcgcagctagtttg
tacattacaggagtgtga
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integrated database retrieval system
