Durio zibethinus (durian): 111303593
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Entry
111303593 CDS
T05242
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
dzi
Durio zibethinus (durian)
Pathway
dzi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dzi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111303593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dzi03019
]
111303593
Messenger RNA biogenesis [BR:
dzi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111303593
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111303593
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
zf-C2H2_CASZ1_1
Motif
Other DBs
NCBI-GeneID:
111303593
NCBI-ProteinID:
XP_022755706
UniProt:
A0A6P5ZS72
LinkDB
All DBs
Position
Unknown
AA seq
654 aa
AA seq
DB search
MSGLINSSINGSASNLPDSSGRSFATSFSGQSGTIQGLHGIHGSFNVPNMPGTLTSRNST
LSNVPTGGVQQPTGSLSGGRFASNNLPVALSQLSHGSSHGHSGVTNRGGISVVGNPGFSS
NTNGVGGSIPGILPASAAIGNRNAVPGLGMSPILGNAGPRITSSMGNMVGGGNIGRSISS
GGGLSVPGLASRLNLSANNGSGSLSVQGQNRLISSVLPQGSSQVISMLGSSYPTAGGPLS
QSHVQAVNNLSSMGMLNDVNSNDNSPFDINNDFPQLTSRPSSAGGPQGQLGSLRKQGLSP
IVQQNQEFSIQNEDFPALPGFKGGNADYAMDLHQKEQLHDNTMSMMQSQHFSMGRSAGFN
LVGSYSSHRPQQQQQHAPSASSSGVSFSSVNNQDLLHLHGSDIFPSSHSSYHSQTSGPPG
IGLRPLNSSNTVSGMGYDQLIQQYQQHQNHPQFRLQQISAVNQSFREPGMKSMQAAQSNT
DPFGLLGLQSVIRMSNPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSDESAKGDPEF
TVPQCYYAKQPPALHQGYFSKFTVDTLFYIFYSMPKDEAQLYAANELCNRGWFYHKEHRL
WFIRVPNVEPLVKTSTYERGSYHCFDPNSFETIRKDNFVVHYELLEKRPALPQH
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttaattaattcttctatcaatggatcagcatcgaaccttccagacagtagc
ggacgatcttttgcaacatctttctctggtcagtctggcactattcagggcctgcatggt
attcatggtagctttaatgttcccaacatgcctggtactctcacatcaagaaactcaaca
ttaagtaatgttccaactggtggggttcaacaacctactgggagcctttctggtggaaga
tttgcatcaaataatctacctgttgctctttctcagttatctcatggcagctcccatgga
cattctggagtaaccaatagaggaggtattagtgttgtaggaaaccctggatttagtagt
aacacaaatggagttggtggttctatacctgggattctcccagcctctgctgcaattggt
aaccgcaatgctgttccaggattgggaatgtccccaattttgggaaatgcgggtcctagg
ataacgagttctatgggaaacatggtcggtgggggcaacatcggtaggagcataagctct
ggtggaggattatctgtacctggtcttgcatctcgtctgaatttaagtgccaataatgga
tctggaagtttaagtgtgcagggacagaataggttgattagtagtgtgcttcctcaagga
tcttctcaggtaatttcaatgttgggcagttcttatcctactgctgggggtccactttcc
cagagccatgttcaagctgtgaacaatcttagctctatgggaatgttgaatgatgtgaac
tcaaatgacaattccccttttgacataaataatgatttccctcagttgacaagtcgtcct
agttctgctggaggacctcaaggacaattgggttcactacgaaaacaaggtcttagtccc
attgttcaacaaaatcaagagttcagcattcaaaatgaagatttccctgctttaccagga
tttaaaggtggtaatgctgattatgcaatggatttgcaccagaaagaacaacttcatgac
aatactatgtcaatgatgcaatctcagcacttctctatggggagatctgcaggatttaac
ttggttggatcctattcatctcatcgcccacaacagcaacagcagcatgctccttcagcc
agtagtagtggggtctccttttcatctgtaaacaaccaagatctcctccatttacatgga
tcagatatcttcccatcctcacattcgagctaccactcacagaccagcggaccacctggg
attggactaagacctctaaattcctcaaatacggtttctggtatgggttatgaccagctc
atccagcaatatcagcagcatcaaaaccatcctcagtttcgtctgcaacagatatcagct
gtcaatcagtcatttagggaaccaggcatgaaatcaatgcaggctgcacagtcgaataca
gacccatttggattacttggtttgcaaagtgtaataaggatgagtaatcctgatctgact
tcccttgctcttggaattgatttgacaacacttgggttaaatttgaattcatcagaaaat
cttcacaagactttcggctctccatggtctgatgaatcggctaagggtgacccagagttc
actgtgccacaatgttattatgctaagcaaccacctgctttacatcaaggttatttttcg
aagtttacagttgacacattgttctatatattttacagcatgccaaaagacgaagctcaa
ttatatgctgcaaatgaactttgtaatagaggctggttttaccacaaggagcaccgattg
tggttcataagggttcccaatgttgagccactagttaagacaagcacatatgagaggggt
tcttatcactgttttgatccgaactcatttgaaacaatccgcaaggataattttgttgtc
cattacgagttgttggaaaagagaccagctttacctcaacattaa
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