Durio zibethinus (durian): 111308560
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Entry
111308560 CDS
T05242
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
dzi
Durio zibethinus (durian)
Pathway
dzi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dzi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111308560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dzi03021
]
111308560
03019 Messenger RNA biogenesis [BR:
dzi03019
]
111308560
Transcription machinery [BR:
dzi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111308560
Messenger RNA biogenesis [BR:
dzi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111308560
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
111308560
NCBI-ProteinID:
XP_022762693
UniProt:
A0A6P6ACZ8
LinkDB
All DBs
Position
Unknown
AA seq
735 aa
AA seq
DB search
MDDSEGGLSFDFEGGLDAAPTAPTASMPVVNSDPSAANNNNNSNSAAPGAVPASTNDPSA
VPGGGAGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCVY
KHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPAVEEVLQKIQQLSSYNYNNKFFQQ
RNAGFPQQTEKSQIPQGQNNVNQGAFAKPSTTESANMQQQQQVQQPQQQVSQTQIQNVPN
GQSNQANRTAIPLPQGISRVLRCPSINNNFQNEFCHHLSEFWSTFLQLDHVVCKDVRYFI
VKSCNRENLELSVQQGVWATQRSNETKLNEAFDSAENVILIFSVNRTRHFQGCAKMTSKI
GGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELE
SSVGEQLASLLYLEPDSELMAISLAAESKREEEKAKGVNSDNGGENPDIVPFEDNEEEEE
EESEEEDESFGAAAQGRGRGRGIMWPPHMPLARGARPMPGMRGFPPMMMGGDGFSYGPVT
PDGFGMPDLFGAPRPFAPYGPRFSGDFPGPTSGMMFPGRPPQPGAMFPSGGLGMMMGPGR
APFMGGMGPTGANPARGGRPVGMPPMFPLPPAPSSQNSGRAIKRDQKTPTNDRYSAVSDQ
GRGQEMAGPGGGLDDETQYQQEGQKAHHGDQFAAGNSFRNDDSDSEDEAPRRSRHGEGKK
KRRSLEGEVATGSDH
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggatgattcggagggaggtctcagcttcgattttgaaggcggtctcgatgctgctccc
accgccccaaccgcctccatgcccgttgtcaactccgatccttctgctgccaacaacaat
aataacagcaactccgccgccccaggtgctgtccccgcttcgacaaatgatccctccgcc
gttcctggtggcggagctgggcgaaggagctttcgacagaccgtatgccggcattggctc
cgcagtctctgcatgaagggcgatgcctgcggtttccttcaccagtacgacaagtcccgc
atgcccgtctgccgattttttcggctctttggtgagtgccgcgaacaagattgtgtctac
aaacacaccaacgaggatatcaaggagtgtaacatgtacaagctaggtttttgtcctaat
ggtcctgactgccgatacaggcatgcaaagcttcccggacctccacctgctgttgaagaa
gtcttgcagaagattcaacaattaagttcttacaattataacaacaaattttttcaacaa
aggaatgctggctttccccaacaaactgaaaaatctcagattccacaaggacaaaacaat
gtaaaccaaggagcatttgcaaaaccttcaacaacagaatctgctaacatgcagcagcag
cagcaagttcaacagcctcaacaacaggtcagccagacccagattcaaaatgtccccaat
ggtcagtcaaaccaggcaaacagaactgctatacctttgcctcaaggaatatctagagtt
ttgagatgtccttcaatcaataataatttccaaaacgaattctgccatcatctatcagaa
ttttggagtacttttctacaactggaccatgttgtttgcaaggatgtaaggtattttatt
gttaaaagttgcaaccgcgaaaatctagaactatccgttcaacaaggtgtatgggcaact
caaagaagcaatgaaactaaattgaatgaagcatttgattctgctgaaaatgtgattttg
atcttctctgttaaccgtactcggcatttccagggttgtgccaagatgacatccaaaatc
ggtggatctgttggtggagggaactggaaatacgctcatggaactgcacattatggacga
aatttctcagtaaaatggttaaagttatgtgagttgtccttccacaaaactcgccatttg
aggaacccctacaatgagaacttaccagtaaagataagtagagattgtcaggagttagag
tcttctgttggtgagcagttggcctccttgctttatcttgagccagatagtgagcttatg
gcaatttcactagcagcagaatcaaaacgagaagaagagaaagcaaagggggtcaattca
gataatggaggagagaacccagacattgttccatttgaggacaatgaagaagaggaagag
gaagaaagtgaggaggaggatgaaagctttggtgctgcagctcagggaagaggaagaggc
agaggaatcatgtggccccctcacatgccactagcccgtggtgccagacccatgcctggg
atgcgaggttttcctcctatgatgatgggtggtgatggcttttcttatggaccagttaca
cctgatggttttgggatgccagatctatttggtgctcctcgcccttttgctccatatgga
ccaagattttctggagattttccaggtcctacatctggcatgatgtttccaggtcgacct
ccacaacctggggcaatgtttccatctggtggactggggatgatgatgggtccagggcgt
gctccatttatggggggtatggggcccacaggtgcaaatcctgctcgaggtggccggcct
gttggcatgcctcctatgtttcccctacctccagcaccttcctctcagaattctggtcgg
gctattaagagagatcagaagacaccaactaatgatagatacagtgcagtatcggatcag
ggcagaggtcaggaaatggctggtccagggggcgggttggatgatgagacacagtatcag
caagaaggacaaaaggctcaccacggagatcagtttgctgctggaaacagcttcagaaat
gatgacagtgacagtgaggatgaggcacccaggaggtcaaggcatggggaagggaagaag
aaacgaagaagcttagaaggggaagttgccactggttctgatcactag
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