Durio zibethinus (durian): 111311754
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Entry
111311754 CDS
T05242
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dzi
Durio zibethinus (durian)
Pathway
dzi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dzi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111311754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dzi03021
]
111311754
03019 Messenger RNA biogenesis [BR:
dzi03019
]
111311754
Transcription machinery [BR:
dzi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111311754
Messenger RNA biogenesis [BR:
dzi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111311754
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
111311754
NCBI-ProteinID:
XP_022767160
UniProt:
A0A6P6AQQ1
LinkDB
All DBs
Position
Unknown
AA seq
1112 aa
AA seq
DB search
MLINMENPRRPFDRSREPGLKKPRLTEELAPNPNGRPFPQRTNPVGPASALRFRSSDLET
NDLSRGGGGAYEPQPVLHQRQQQQQQHQELVSQYKTALAELTFNSKPIITNLTIIAGENL
HAAKAIAATICANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFASRLPEVFCKAYRQVD
PPVHQSMRHLFGTWKGVFPLQPLQMIEKELGFTPMINGSSSGTTTSRPDPISQRPPHSIH
VNPKYLEKQRLQQSSRAKGMVNDMTGTLANSKEDSESPDRAAITAGRPYGDPSVKMNNIQ
CSHRHLFNDPDRENIGATFGDYDYGSDLSQTPGIGVGRTSGKLTDQGHDRPWYGATSSIT
ETTSSQRNGFNIKHGSQNYSASKYVNADPRLRATQNIAGRSSSGLSSSWKNSEEEEFMWE
MHSRLSEHDAANISNNSGKDHWIPDVSEKLDFESQLRKAPSIHDVGSRFDTETSADSLST
EQKDKPSYGRRISSAWPLQESHKTDGLPVISSSHSESYSATIGGLPTGASSSLARMGMRS
QMGSSHLGTSGFGILKNVASGSMSTLGQQRIQSLETAPAPEQSPMRLHSSSTSFPAHHPH
QQLQKLVEQDYPQAHSPPRTDPKPSQFSGKLNVGFHKHSPKASSALISSFQSSRRHSLSQ
PPQPDSMLAEPSGQTQKPLPSQISKVGAASTPGNAAEHTNPLAIETSEPSSTSSLLAAVM
KSGILSNNSFTGSLPNKISKDLGQMPSQPSLPNEPPPAVFTTSGMRVDTATSSGSASHDA
IAATTNSYRGKVEQLPLPPVLPSSTLVSNALLEASDAESKASIPISNLLSSLVAKGLISA
SKKDALSLPSLLIPTQMQTNSPGMEKPTESLNKSLDISTSSPLPASSIPSSSDAPRSSTM
DEVSFSKPATESSVASHQSGPMEVENLIGLEFRPDVIREFHSSVISGLLDDLPHCCSLCG
LRLKLQERLDRHLEWHAMKKTEAEGSDRALRGWYARSDDWIAGKPGQLVFESIGSVNQLE
KTTEKTELMVPADENQYACMLCGELFEDYFSQDRGEWMFKGAVCLTIPPKDGEVENTDKS
EATGPIVHANCMSEGSVHDLGLAGGIKMEKEE
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgttaatcaatatggagaatccgcgtagaccatttgatagatcaagagagcccggtttg
aaaaaaccgcgtttaaccgaagaactcgctccgaaccctaacggtcgaccttttcctcaa
cggacgaacccagttggtccggcctctgctttacgattccggtccagtgatttggagacc
aatgacttgagccgcggaggcggtggagcttacgagccacaaccagttttacatcagcgg
cagcaacaacaacaacagcaccaagagttagttagccagtacaagacggcgttagctgag
ctgacctttaactcgaagccgattataactaacttgacaataatcgctggcgagaatctt
cacgccgccaaggcgattgctgctactatctgcgccaacattcttgaggttcccagtgac
caaaagctgccatcgctctatcttttagacagtattgtaaagaatatcgggagagattat
attaaatattttgcttccagattacctgaggtgttctgcaaagcatatagacaagttgat
cctcctgtacatcagagtatgcggcatctttttggaacatggaaaggggtattccctctt
cagcctctccagatgattgaaaaggaacttggctttactcctatgataaatggttcatct
tcaggaaccacaacatctagacctgatccaatttcacagcgtccaccacatagcattcat
gtaaatccaaagtatctagaaaagcagcgtcttcaacagtcaagcagggcaaaaggtatg
gttaatgatatgactgggactttggccaactcaaaggaggattcagagagtccagataga
gcagccattacagctggacggccatatggagatccttctgttaaaatgaataacattcag
tgttctcatagacacttgtttaacgatcctgatcgtgagaacattggtgctacatttggt
gattatgactatggctctgatctttcacagactcctggcattggagttggaagaactagt
gggaaacttaccgatcaagggcatgataggccttggtatggagctacaagcagtattact
gagacgacttccagccagaggaatggtttcaatattaaacatggatctcaaaattactca
gcatccaaatatgtgaatgctgatcctcgtttacgggcaacacaaaacattgctggtaga
agcagtagcgggttgtctagcagctggaaaaactctgaggaagaagaatttatgtgggag
atgcactctagattgtctgaacatgatgcagccaacatctctaacaactctggaaaagat
cattggattcctgatgtttccgaaaaattggattttgaaagtcagctccgcaaagctcca
agtattcatgatgtggggtcaaggtttgatacagaaacctctgctgattcattatccact
gagcagaaggacaaaccttcttatgggcgccggatttcatctgcatggcctttgcaggag
tcacataaaacagatggattgcctgttattagttcgagccattctgagagctattctgcc
actattggtgggttgcctactggtgcaagttcttccctggccaggatgggaatgcgatca
caaatgggttcatcccatttaggaacctcaggctttgggattttgaaaaatgtggcatca
ggatccatgagtactttaggacagcagcgaattcagtccctggaaactgcaccagcacct
gaacagtctcctatgcgcctgcattcatcttcaacttcatttcctgcacaccatccccat
caacagttacagaaattggttgaacaagactatccacaagctcattcccctcctcggact
gatccaaaaccatcccagttttcaggaaagttgaatgttgggtttcataaacactctcct
aaggcttcatctgctttgatttcttcttttcaatctagccgtcggcattccctttcacaa
ccaccacaaccagactccatgttggctgaaccttctggtcagactcagaagccacttccg
tcccagatctccaaagtaggagcagcctcaacaccaggaaatgctgcagagcataccaat
ccgcttgctattgaaacttcagaaccttcaagtacaagtagtctattggccgctgtaatg
aagagtggaatcctctccaacaattcctttactggcagccttccaaataagatttctaaa
gatttggggcaaatgccatcacagccttctcttccaaacgagcctccacctgctgttttt
acaacctcaggcatgagggttgatactgcaacttcatcaggttcagcatcccacgatgca
atagcagctactacaaatagttatcggggaaaggtagaacagctaccactgcctcctgtg
ctaccatcttcgactcttgtaagtaatgccctattggaagcttcagatgcagaaagcaag
gcttcaattccaatatccaaccttttgagctcattagttgcaaaaggtttaatatctgca
tcaaagaaggatgctctatctctcccatctcttctgattcctactcaaatgcagacgaat
agcccaggaatggagaagccaactgaatcactgaacaagagcttggacatttctaccagt
agtcctttgccagcttcttccattcctagttcatctgatgctcctcgttcctccaccatg
gatgaggtttcattttccaaacctgctacagaaagttcagttgcctcacatcagtctggc
ccaatggaagtagaaaacctcataggattagagttcaggccagatgtaatcagagaattt
cattcatctgtgatcagtggattgttggatgaccttccacattgttgcagcttatgtggt
cttcgacttaagcttcaggaacggcttgatagacacttagagtggcatgccatgaaaaag
actgaagcagaaggttctgatagggcattgaggggatggtatgcaaggtcagatgactgg
attgctggaaagccagggcaattggtatttgaatctattggttctgtgaaccagttggaa
aagacaacagaaaagactgagcttatggttcctgccgatgaaaatcaatatgcatgcatg
ttatgtggtgagctatttgaagattattttagccaggacaggggcgaatggatgtttaag
ggagcagtgtgcttgactataccaccaaaggatggtgaggtagaaaatacagacaagagt
gaagccaccggtcccattgtgcatgcaaattgtatgtcagaaggttcagttcatgacttg
ggactggctggtggtattaaaatggaaaaggaagaataa
DBGET
integrated database retrieval system
