Duganella zoogloeoides: SR858_00030
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Entry
SR858_00030 CDS
T09628
Symbol
rtcR
Name
(GenBank) RNA repair transcriptional activator RtcR
KO
K14414
transcriptional regulatory protein RtcR
Organism
dzo
Duganella zoogloeoides
Brite
KEGG Orthology (KO) [BR:
dzo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dzo03000
]
SR858_00030 (rtcR)
Transcription factors [BR:
dzo03000
]
Prokaryotic type
Other transcription factors
Others
SR858_00030 (rtcR)
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GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
Mg_chelatase
AAA
AAA_5
AAA_22
AAA_16
NACHT
AAA_7
AAA_30
AAA_19
AAA_14
ATPase_2
MCM
TniB
BrxC_BrxD
bpMoxR
T2SSE
Motif
Other DBs
NCBI-ProteinID:
WQH04770
LinkDB
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Position
complement(5561..7111)
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AA seq
516 aa
AA seq
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MKIKRKVVIGFVGSQLDGGQRTERWEKWRPSVSLTQHDDLVIDRFELLYNGKFRDLSERV
TRDIATVSPETLVAIHEIPMRDAWDFEDVYGALFDFAKNYPFDTEHEDYWIHITTGTHVV
QICLFLLTEARYLPGRLLQTSPPRRGGDQAGYQLIDLDLSRYDQIAQRFSSEQAEGVAFL
KSGIPTRNARFNTMIEEIEKVAVKSRAPMLLMGPTGAGKSFLARRVFELKKNRHQLDGKF
VELNCATVHGDGAASTLFGHIKGAFTGAASNRPGLLRSAHQGLLFLDEIGELGLNEQAML
LKALEEKRFLPVGSDEEVASDFQLIAGTNRDLGAEVLAGRFREDLYARINLWTYSLPQLA
ERPEDIEPNVDFQLALFAMESGEKVSFNKEARTRYMRFAMSGEAVWNGNFRDLAASVTRL
ATLSDAGRITDAQVMDEIARLKRLWRHSVQPELLTGLDLFDSMQLEAVIAVCRQSKSLSD
AGRKLYAVSRDAKAKPNDADRLKKYLARFDLHWDEL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcaaacgcaaagtagtgatcggctttgtcggcagccagttagatggcggccaa
cgcaccgagcgctgggaaaaatggcggcccagcgtctcgctcacccagcacgacgacctg
gtgatcgatcgtttcgaattgctctacaatggcaaattcagggacttgagcgaacgcgta
acacgcgacatcgccaccgtatcgcccgaaaccttggtcgccatccacgagataccgatg
cgcgacgcttgggatttcgaggatgtgtatggggcgctgttcgatttcgccaagaactat
ccgttcgacaccgagcacgaggactactggatccatatcaccaccggtacccacgtggtg
caaatctgcttgttcctgctgacggaggcgcgctacctgcccggccggctgctgcagaca
tcgccgcctcggcgcggcggcgaccaggccggttaccagctgatcgatctcgatctctcg
cgctacgaccagatcgcccagcgcttttccagcgaacaggccgaaggcgtggcgttcttg
aaatccggcattcctacccgtaatgcccgcttcaacaccatgatcgaggaaatcgaaaaa
gtggcagtgaagtcgcgcgccccgatgctgttgatgggcccgaccggcgccggcaaatcg
tttctggcgcggcgcgtattcgaactgaaaaagaatcgccatcagcttgacggcaagttt
gtcgagctgaactgcgccaccgtgcacggcgacggcgcggcgtctaccttgttcggccat
atcaagggggcttttacgggagccgccagcaatcggccggggttgctgcgcagcgctcac
cagggcttgctgttcctcgatgaaataggagagctgggcctgaacgagcaagccatgctg
ctcaaggctctggaagagaagcgctttctgccggtgggcagtgacgaggaagtggccagc
gacttccagttgatcgccggcaccaaccgcgacctgggcgccgaggtgctggccggccgc
ttccgcgaagatttatatgcgcgtatcaacttgtggacctattcgctgccacagttggcc
gagcggcccgaggatatcgaacccaatgttgatttccagttggcgctgtttgccatggaa
agcggcgagaaagtcagcttcaacaaggaagcgcgcacccgctacatgcggtttgccatg
tccggcgaggcagtatggaatggtaacttccgcgacctggcagcttcggtcactaggctg
gccacgctgtcagatgccggccgtatcaccgacgcacaagtgatggatgaaatcgcgcgc
ctgaaacggctatggcgacacagcgtgcagccagagttgttgaccggactggatttgttc
gacagcatgcagctggaagcggtgatcgccgtctgccggcaatcgaaatcgctgtcggat
gccggccgcaagttatacgcggtatcacgcgatgccaaggccaagcctaacgatgccgat
cgcctgaagaaatacctagccaggtttgacctgcattgggatgagctctga
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