Duganella zoogloeoides: SR858_00040
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Entry
SR858_00040 CDS
T09628
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dzo
Duganella zoogloeoides
Brite
KEGG Orthology (KO) [BR:
dzo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dzo03016
]
SR858_00040
Enzymes [BR:
dzo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SR858_00040
Transfer RNA biogenesis [BR:
dzo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SR858_00040
Prokaryotic type
tRNA splicing ligases
SR858_00040
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
WQH04772
UniProt:
A0ABZ0XZW2
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All DBs
Position
7301..8536
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AA seq
411 aa
AA seq
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MEKLNYDTLDTSNGSPIKMWTQGVPVEESAKQQLANTARMPFIYKHIAVMPDVHLGKGST
IGSVIPTLGAIIPAAVGVDIGCGMMAAKTTLNANDLPDNLGPLRSAIERAIPHGMSPKTR
SHRGRDEGSWNTPPAPVDAAWTQLKDEFDVICQKTPKLSKTNNYRHLGTLGGGNHFIEVC
LDETGAVWFMLHSGSRGVGNAIGSHFIELAKKDMRTHFINLPDDDLAYLEEGTTHYQDYV
EAVGWAQRFARTNREVMMHNLIAAVRTIITKPFETHVEAVNCHHNYVQRERHFGKDVLIT
RKGAVSARPGELGIIPGSMGAKSFIVRGKGNEESFNSCSHGAGRTMSRNEAKRRFNADDH
ARATSGVECRKDASVVDEIPMAYKDIDAVMHAQRDLVEVVHTLKQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagctcaattacgataccctcgacaccagcaacggtagcccgatcaagatgtgg
acccagggcgtaccagtggaagaatcggccaagcagcagctggccaacaccgcccgcatg
ccgttcatctacaagcacatcgcggtgatgccggacgtccacctgggcaaaggttcgacc
atcggcagcgtaattccgacgttgggcgccatcattccggcggcggtcggcgtcgatatc
ggttgcggcatgatggcagcgaagaccacgctcaacgccaacgatctgccggacaacctg
ggaccgctgcgcagcgccatcgagcgcgccattccccacggtatgtcgcccaagacccgc
agccatcgcggccgcgacgagggcagctggaacacgccgccggcgccggtcgatgcggcc
tggacgcaactcaaggacgagttcgatgtgatttgccagaaaacgcccaagctgagcaag
accaacaactaccggcacctgggcacgctcggcggcggcaaccacttcatcgaagtgtgc
ctcgatgaaaccggcgccgtgtggttcatgctgcactcgggctcgcgcggcgtgggtaat
gccatcggcagccacttcatcgagcttgccaagaaagatatgcgcacccacttcatcaac
ctgcccgacgacgacctggcgtacctggaagaaggcaccactcactaccaggattatgtc
gaggcggtgggctgggcccagcgcttcgcccgcaccaaccgcgaggtgatgatgcacaac
ctgattgcggcggtgcgcaccatcatcaccaagccattcgagacccacgtggaggcggtc
aactgccaccacaattatgtgcagcgcgagcggcacttcggcaaggatgtgctgatcacc
cgcaagggcgcggtgtcggcgcggccgggcgaactgggcatcattccgggctcgatgggc
gccaagagttttatcgtgcgcggtaaaggcaacgaagaaagttttaacagctgcagccac
ggcgccggccgcaccatgagccgcaacgaggccaagcgccgcttcaatgctgacgaccac
gcgcgcgcaacgtccggcgtggaatgtcgcaaggatgccagcgtggtggacgagattccg
atggcctacaaagatatcgatgcggtcatgcacgcgcagcgcgacctggtggaagtggtg
cacaccctcaagcaggtcgtgtgcgtgaaaggataa
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