Duganella zoogloeoides: SR858_03180
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Entry
SR858_03180 CDS
T09628
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dzo
Duganella zoogloeoides
Pathway
dzo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dzo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SR858_03180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dzo03019
]
SR858_03180
Enzymes [BR:
dzo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SR858_03180
Messenger RNA biogenesis [BR:
dzo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SR858_03180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_19
Cas3-like_C_2
AAA_22
Utp25_C
SRX
Motif
Other DBs
NCBI-ProteinID:
WQH05352
UniProt:
A0ABZ0XZZ8
LinkDB
All DBs
Position
711909..713510
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AA seq
533 aa
AA seq
DB search
MESAAPAPAPAPAPVTSAAPAAEAVAVAAVPVAPVVPAAPAAPAAAVAPVASVRFADFGL
SPLIQRALDEAGYEHPTPIQAEAIPVLLQGRDVMGAAQTGTGKTASFSLPIIQMLLANAS
HSTSPARHPVRALILTPTRELAVQVADNVKAYAKHTPLRSTVVFGGMDMKPQTALLKAGV
EIVIATPGRLLDHIEQKNISLSQVQMLVMDEADRMLDMGFLPDLQRIINLLPKQRQNLMF
SATFSPEIKKLANTFLSNPITIEVARSNQTADKVTQVVYKVAENQKHAVTAHILRQRELK
QVIIFSNTKIGCSRLARELEREGMKAVAIHGDKTQQERMAALEAFKKGETDILVATDVAA
RGLDITDLPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISIYSDKDERLLADIEKLIKQ
TIKRGELQGFNPAPAFGASATGEERGNRGERSERGDRHPRRPEDSSRGPASRPTDRAPRG
MGMAPRRDKVDPWFLKPYEPARSTLPPASASASNAPAKPKQKLAVLLGGVPKQ
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
gtggaatccgcagcaccagcaccagcaccagcaccagcaccggtaacctctgctgcgccc
gcagccgaggcggttgccgtcgcggcggtgccggttgcgccagttgtaccagccgctccg
gctgcgccagccgcagcggtagcgccggtcgccagcgtgcgctttgccgactttggcctg
tcgccgctgatccagcgcgcgctcgacgaagccggttacgagcatccgacgccgatccag
gccgaggcgatccccgtgctgctgcaaggacgcgatgtcatgggcgcggcccagaccggc
accggcaagaccgccagtttctcgctgcccatcatccagatgctgctggccaatgccagc
cacagcacctcgccggcgcgccacccggtgcgcgcgctgatcctcacgcctacccgcgaa
ctggcggtgcaggtggccgataacgtcaaggcctatgccaagcacacgccgctgcgctcc
accgtggtattcggcggcatggacatgaagccgcaaacggcgctgctcaaggccggcgtg
gaaatcgtcatcgccactccgggccgactgctcgaccatatcgagcaaaagaacatcagc
ctgtcgcaagtgcaaatgctggtcatggacgaagccgaccgcatgctggacatgggtttc
ctgccggacttgcagcgcatcatcaatctgttgccgaagcagcgccagaacctgatgttc
tcggccacgttctcgccggaaatcaaaaagctggccaacaccttcctcagtaacccgatc
accatcgaagtcgcgcgcagcaaccagaccgccgacaaggtcacccaggttgtctacaag
gtcgcggagaaccagaagcacgcggtcaccgcgcacatcctgcgccagcgcgagctgaaa
caggtgatcatcttctccaacaccaagatcggctgctcgcgcctggcgcgcgaactcgag
cgcgaaggcatgaaggcggttgccatccacggcgacaagacccagcaagagcgcatggcc
gcactggaagcgttcaagaagggcgagaccgacatcctggtcgccaccgacgttgccgcc
cgtggcctcgacatcaccgacctgccatgcgtgatcaactacgatctgccgtacaacgcc
gaagactacgtccaccgcatcggccgcaccggccgcgccggcgcctccggcgacgccatt
tcgatctactccgacaaggacgagcgcttgctggccgacatcgaaaagctgatcaagcaa
accatcaagcgcggcgagctgcaaggcttcaatcctgcgcctgccttcggcgcctccgcc
actggcgaagagcgcggcaaccgtggcgagcgcagtgaacgtggcgaccgccatccgcgc
cgcccggaagacagcagccgtggcccggccagccgtccgaccgaccgcgccccgcgcggc
atgggcatggccccgcgccgcgacaaggtcgatccatggttcctcaagccgtacgaaccg
gcccgcagcacgttgccccctgccagcgcctccgccagcaatgccccggccaagcccaag
caaaagctggcagtattgctcggcggcgtgccgaagcaataa
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