Duganella zoogloeoides: SR858_03285
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Entry
SR858_03285 CDS
T09628
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dzo
Duganella zoogloeoides
Pathway
dzo03030
DNA replication
dzo03430
Mismatch repair
dzo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dzo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SR858_03285 (dnaE)
03430 Mismatch repair
SR858_03285 (dnaE)
03440 Homologous recombination
SR858_03285 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dzo03032
]
SR858_03285 (dnaE)
03400 DNA repair and recombination proteins [BR:
dzo03400
]
SR858_03285 (dnaE)
Enzymes [BR:
dzo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SR858_03285 (dnaE)
DNA replication proteins [BR:
dzo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SR858_03285 (dnaE)
DNA repair and recombination proteins [BR:
dzo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SR858_03285 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
P63C
RMI2
Motif
Other DBs
NCBI-ProteinID:
WQH05373
LinkDB
All DBs
Position
740286..743846
Genome browser
AA seq
1186 aa
AA seq
DB search
MNMVANEQAAGTVIAPDEGAVVPAGPAFVHLRVHSEYSIVDGLVRIDDLVKTAAKDKQVA
LAVTDLSNMFGMVKFYKAARGKGVKPVVGVDVWITNDDNRDKPSRLMLLAKNRMGYLQLC
ELLSQAWLTNQYKGRAEIRTEWLANLVNQQYALLPGDSPANGLIALSGAHFGDVGMAIEN
GNPELAEQNAQKWAKIFPGHFYIEIQRAGQANQEAQVRHAVSLAAKLGLPVVATHPVQFI
SKDEFIAHEARVCIAEGEMLANGKRVRRFNEQMRFLTQAEMRELFHDLPAALHNSVEIAK
RCNLTLTLGKPQLPNFPTPGMTIDEFLIAETKKGLEERLEQLYPDPVRREKERPRYEERL
DFENKTIINMKFPGYFLIVAEFIQWGKNNDVPIGPGRGSGAGSLVAYALKITDLDPLKYN
LLFERFLNPERVSMPDFDIDFCQEKRELVIQHVKDLYGRDAVSQIATFGTMAAKGAIRDV
GRVMDFGYNFCDGVSKLIPFKPGKPVSIAEAIEEEPMLKERQQNEEEVAQLLDLAQQVEG
ITRNIGMHAGGVLIAPGKLTDFCPLYTQGGDGGVVSQYDKDDVEAVGLVKFDFLGLTTLT
ILDRAVRYIKALDPVEKDFDLAKLPLNDRPSYDLLTKAKTVAVFQLESRGMQGMLKDARP
DRFEDIIALVALYRPGPMDLIPDFCKRKHGEKFDYPDPRTESILSETYGIMVYQEQVMQM
AQIVGGYSLGGADMLRRAMGKKKAEEMAEHREIFRAGAAKDGLSAQKADEIFDLMEKFAG
YGFNKSHAAAYALLSYHTAYLKAHHPAAFMAANMSLAMEDTEKVKILVEDAIDICGLTIL
PPDINQSQYRFVPDGPPPSVTGKKVTQIRYGLGACKGAGQNAIEAIIAARKADGPFVSLF
DFCKRVDKKQINRRTIESLIRAGAFDCLNVDRAILLASVSFAMEYADQQLKSANQVSLFG
GDDSDLEPPPDYVKAEIFTDRQRLAEEKMALGFYLSGHMFDSFAPEARRFSRTKLADLEP
SRDPRILCGVITGIRPQMTQRGKLLIVTLDDKSAVVEVTVYAEVFEECKHMIKEDEFLAV
IGKVSEDRFSGGLRISAEKVFDIVSARVKHGKQLAMALPTTLDVRKMAEVLAPHRHADGL
PVSARIMPQGVACTVQLGEGWRVAPSDDLQQALRQQLGAQDVLIEY
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggtagcaaacgaacaagcggcaggaactgtcattgcgcccgacgagggtgcg
gtagtgcctgccggaccggcttttgtccacctgcgggtccactccgagtactcgatcgtc
gatggcctggtgcgcatcgacgacctggtcaagaccgccgccaaggacaagcaggtggcg
ctggcggttaccgacctgtccaatatgttcggcatggtcaagttctacaaggccgcgcgc
ggcaagggcgtcaagccggtggtcggtgtcgacgtgtggatcaccaatgacgacaaccgc
gacaaaccatcgcgtctgatgctgctggccaagaaccgcatgggctacctgcagctgtgc
gaactgctgtcgcaagcctggctcaccaaccagtacaagggccgcgccgagatccgcacc
gagtggctggccaacctggtcaaccagcaatacgcgctgctgcccggcgattcgccggcc
aacggcctgatcgccctgtccggcgcccacttcggcgacgtcggcatggcaatcgaaaac
ggcaacccggaactggccgagcaaaacgcgcaaaaatgggccaagattttccccggccat
ttttatatcgaaatccagcgcgccggccaggccaaccaggaagcgcaggtgcggcacgcg
gtgtcgctggccgccaagctgggactgccggtggtggccacgcacccggtgcagttcatt
tccaaggacgaattcatcgcccacgaagcgcgcgtgtgtattgccgagggcgaaatgctg
gccaacggcaagcgcgtgcgcaggttcaacgagcagatgcgtttcctgacgcaagcggag
atgcgcgagctgttccacgatctgccggccgcgctgcacaactcggtggaaatcgccaag
cgctgcaacctcacgcttaccttgggcaagccgcagctgcccaacttccccacgcccggc
atgaccatcgacgagttcctgatcgccgaaacgaaaaaagggctggaagagcggctcgag
cagctgtatcccgacccggtgcggcgcgaaaaagagcggcctcggtacgaggagcggctc
gacttcgagaacaagaccatcatcaacatgaagttccccggctacttcctgatcgtggcc
gagttcatccagtggggcaagaacaacgacgtgccgatcggtcccggccgcggttctggc
gccggttcgctggtcgcctacgcactgaaaatcaccgacctcgatccgctcaagtacaac
ctgctgttcgaacgtttcctcaacccggaacgggtctcgatgcccgacttcgatatcgac
ttttgccaggaaaagcgcgagctggtgatccagcacgtgaaggacctgtacggccgcgac
gcggtctcgcagatcgccacgttcggtaccatggcggccaagggcgcgatccgcgacgtg
ggccgcgtgatggacttcggctacaacttctgcgacggcgtgtcgaaactgatcccgttc
aagccgggcaagccggtgtcgattgccgaggccatcgaagaagaaccgatgctcaaggaa
cgccagcagaacgaggaggaagtggcgcaactgctggacctggcgcagcaggtcgagggc
atcacccgcaacatcggcatgcacgccggtggcgtgctgatcgccccgggcaagctcacc
gacttctgcccgctgtacacccagggtggcgacggcggcgtggtgtcgcagtacgacaag
gacgacgtcgaggccgtgggcctggtcaagttcgacttcctgggcctgaccacgctgacc
attctggaccgcgcggtgcgctacatcaaggcgctcgacccggtcgaaaaagatttcgac
ctggccaagctgccgctgaacgacaggccgtcgtacgacctgctcaccaaggccaagacg
gtcgcggtattccagctcgagtcgcgcggcatgcagggcatgttgaaggatgcgcggccc
gaccgcttcgaggacatcatcgcgctcgtcgccttgtaccgcccggggccgatggacctg
atcccggacttctgcaagcgcaagcacggcgaaaaattcgactatcccgatccgcgcacc
gagtcgattctgtccgaaacctacggcatcatggtgtaccaggagcaggtgatgcagatg
gcccagatcgtcggcggctactcgctgggcggcgccgacatgctgcgccgcgcgatgggt
aaaaagaaggccgaagagatggccgagcaccgcgagattttccgcgccggcgccgccaag
gacggcctgtcggcgcagaaggccgacgagatcttcgacttgatggaaaagttcgcgggc
tacggtttcaataaatcgcacgccgccgcgtacgcgctgctgtcgtaccacactgcatat
ctcaaggcgcaccatccggccgcgttcatggcagccaatatgtcgctggccatggaagat
accgagaaggtcaagatcctggtcgaggacgcgatcgacatctgcggcctcaccatcctg
ccgcccgatatcaaccagtcgcagtaccgcttcgtgccggacggtccgccgccgtcggtc
accggcaaaaaggtcacgcaaatccgctacggcctcggcgcctgcaagggcgcgggccag
aacgccatcgaggcgatcatcgccgcgcgcaaggccgacgggccgtttgtcagcctgttc
gacttctgcaagcgcgtcgataaaaaacagatcaaccgccgcaccatcgagtcgctgatc
cgcgccggcgcttttgactgcctgaacgtcgatcgcgcgattttgctggcgtcggtcagc
ttcgccatggagtacgccgaccagcaactgaaatcggccaaccaggtcagcctgttcggc
ggcgatgacagcgacctggaaccgccaccggactacgtcaaggccgaaatcttcaccgac
cgccagcgcctggccgaggaaaagatggcgctgggcttttacctgtccggccacatgttc
gattcgttcgcgcccgaggcgcgccgcttctcgcgcaccaagctggccgacctggaaccg
tcgcgcgatccgcgcatcctgtgcggcgtgatcaccggcatccgtccgcagatgacacag
cgcggtaaactcttgatcgtcaccctggacgacaagagcgcggtggtggaagtgactgtg
tacgccgaggtgttcgaagagtgcaagcacatgatcaaggaagacgagttcctggcagtg
attggcaaggtctccgaagaccgcttctcgggcggcctgcgcatctcggcggaaaaagtg
ttcgatatcgtcagcgcccgcgtcaagcacggcaagcaactggcgatggccctgcccacc
acgctcgacgtgcgcaagatggcggaagtcctggcgccgcaccgccatgccgatggcttg
ccggtgtcggcacgcatcatgccgcagggcgtggcgtgcacggtgcaactgggagaaggg
tggcgcgtggcgccgtcggacgacttgcagcaagcgctgcgccagcaattgggcgcgcag
gatgtgctgatcgagtattga
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