Duganella zoogloeoides: SR858_05310
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Entry
SR858_05310 CDS
T09628
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dzo
Duganella zoogloeoides
Brite
KEGG Orthology (KO) [BR:
dzo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dzo03019
]
SR858_05310 (hrpA)
Enzymes [BR:
dzo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SR858_05310 (hrpA)
Messenger RNA biogenesis [BR:
dzo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SR858_05310 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
T2SSE
nSTAND3
NACHT
AAA_30
SLFN-g3_helicase
SRP54
TsaE
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
WQH05758
LinkDB
All DBs
Position
1199725..1204080
Genome browser
AA seq
1451 aa
AA seq
DB search
MSEASNKPKSPPNTLRGPQDRRPQAPASPFAEALKGVVTVRTEPVPGKVPNPGGAPRGKG
APQQRPAAGIESPGARTSQRRPAAGNDGRGRGAPGGSPSARAEGDGKNASRARLTPEEQA
AREAAREAREAERNFRTPLPPITFPEDLPVSGRRHEIAAALQANQVIIVSGETGSGKTTQ
LPKICLELGRGQKGLIGHTQPRRIAASSTAKRIAAELNSPLGQHVGFKVRFADTLQKGAS
VKLMTDGILLAETQTDPLLKAYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITS
ATIDADRFSRHFGTPEKPAPVIEVSGRLYAVEVRYRPIDSDVPNKANPGGNAAAIANAEG
KGHRTAAAREKRDLMDAVVDAVDELARLGSGDVLVFLPGEREIRDTAEALRKHHPPHVEI
LPLFARLSAEEQERVFKVSNARRIVLATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKV
EQLQIEPIAQSAANQRAGRCGRVADGVCIRLYDEQDYLLRPKFTEPEILRSSLASVILRM
KSLHLTDVESFPFIEPPLARAIADGYQLLQELGAVDEYNQLTALGQKLAKLPLDPRVGRM
ILAALDNVCLSEVLIIASALSVQDPRDRPMEHQQAADEAHKKFADEKSEFLSYLKIWRWF
ENAIEHKKTNRQLMDNCRTNFLSQLRLREWRDVHSQLVTLVKEQGWRVNELPATYENLHL
ALLTGLLGNIGFKSEDEPGAGYLGARGIKFHIWPGSSLLKKPGKWIMAAELVDTTRLYAR
CVARIEPEWLEKVGGHLLKKSWGEPRWEKRSAQVTASERATLYGLVVYSQRRINYGAFNP
AEAREIFIRDALVGGDYDTRAPFFAHNHKLIKDIENLEHKSRRLDVLVDDELIAAFYDKL
IPADVVNGAGFEKWHKDATAAEPRLLYLNRDELMRHEAAGVTTELFPKIMSVTGLELGLT
YHFEPGSVRDGVTLAVPLYALNQLPRERCEWLVPGMLKEKVHLLLKSLPQKLRRHCVPLP
DYAAKFCERVNEAGVFGRGDLVDAIIADIRKQLTIAVLTTDFKPETLPAHHFMNFKVIDE
HGRQLDMGRNLATLQAEFGMQARESFQKMAETSGTTVTSAALSAAQPGGGAKPAAGGKAG
AAAPVTATGGKGGSGAAPHGGVDAAEPSNLTNLSNWTFGELPELLEIPQGKLTLIGFPAL
VDKRTHCDLEVFDDPTVAARTHRQGLRRLFALQMKDQIKFIEKSIPNLQQMGMQYMAMGT
QEELRDEIINKALDIACLQDPLPTDAASFTKRKDEGKSRLVLLVNEVARLLSQVLTEFHG
LPKRLQGLPQAAATDMQGQLQGLVHKRFLSDNDYSQLSHFPRYLKAMNVRIEKLRADPAR
DAKLMADWQLAATPYQRLHRDKSAGKNTDPKLVEFRWMLEELRVSLFAQELRTPMPVSVK
RLQKVWESMLR
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagccagcaacaagcctaaaagcccccccaacacactccgtggcccgcaagac
cgccgcccgcaagcccctgccagcccgtttgccgaggcgttaaaaggcgtggtcactgtc
aggacggagccggtgccgggcaaggtcccgaacccgggtggggcgccgcgcggcaagggc
gcgccgcaacagcgcccggctgctggcatcgaaagtccgggtgcccgcacgtcccagcgg
cgtcccgcggctggcaatgacggtcgtggccgcggtgcgcctggcggtagtccgtccgcc
agggcggagggcgacggcaagaatgcgtcgcgcgcgcgcctgacgccggaagagcaggcg
gcgcgcgaagccgcacgcgaggcgcgtgaggccgagcgcaatttccgtacgccgctgccg
ccgatcaccttccccgaagatttgcccgtctcgggccgccgccacgagatcgccgccgcc
ttgcaggcgaaccaggtgattatcgtttccggcgagaccggttccggcaaaaccacccag
ctgccgaaaatctgcctggaactgggtcgtggccaaaaggggctgatcggccatacccag
ccgcgccggatcgccgcgtcgtccaccgccaagcgcattgccgccgaactcaattcgccg
ctgggccagcacgtgggtttcaaggtgcgttttgccgacaccctgcaaaagggcgcgtcg
gtcaagctgatgaccgacggtatcctgctggccgagacccagaccgatccgttattaaaa
gcctacgacaccatcatcatcgacgaggcgcacgaacgcagcctcaatatcgacttcctg
ctcggctacctcaagcagctgctgccgcgccgccccgatttgaagatcatcatcacgtcg
gccaccatcgacgccgaccgcttttcgcgccacttcggcacgccggaaaaaccggcgccg
gtgatcgaggtatcgggccgcctgtacgcggtggaagtgcgctaccggccgatcgacagc
gatgtgccgaataaagctaaccccggcggcaatgccgcagcgatcgccaatgccgaaggc
aaaggacaccgcacggccgccgcgcgcgagaagcgcgacctgatggatgcggtggtcgat
gcagtcgatgaactggcgcgcctcggttccggcgacgtcctggtctttttgcccggcgaa
cgcgaaatccgcgacaccgccgaagcactgcgcaaacatcatccgccgcacgtggaaatc
ctgccgctgttcgcgcgcctgtcggccgaggagcaggagcgcgtgttcaaggtgagtaat
gcccgccgcatcgtgctggccaccaacgtggccgagacgtcgctgaccgtgcccggcatc
cgctacgtggtcgatgccggcctggcccgcgtcaaacgctatagctaccgcaacaaggtc
gagcagttgcagatcgaaccgatcgcgcagtcggccgccaaccagcgcgccggccgttgc
ggccgcgtggccgatggcgtgtgtatccgcctgtacgacgagcaggattatctgttgcgg
cccaagttcaccgagccggaaatcctgcgctcgtcgctggcgtccgtcatcctgcgcatg
aagtcgctgcacctgaccgacgtggaaagcttcccgttcatcgagccaccgctggcgcgc
gcgattgccgacggctaccagctactgcaagagctgggcgccgtcgacgaatacaaccag
ctcacggcgctcggccagaagctggccaagctgccgctcgacccgcgcgtgggccgcatg
atcctggccgccctcgacaacgtgtgcctgagcgaagtgctgatcattgcctcagccctg
tcggtgcaagatccgcgcgaccgcccgatggaacaccagcaggcggccgacgaggcccat
aaaaagttcgccgatgaaaaatctgagttcctcagctacctgaaaatctggcgctggttc
gaaaacgccatcgagcacaagaaaaccaaccgccagttgatggacaactgccgcaccaat
tttctctcgcagctgcgcctgcgcgagtggcgcgacgtccattcgcaactggtcacgctg
gtcaaggagcagggctggcgcgtcaacgagttgccagccacctacgagaacctgcacctg
gccctgctgaccggtttgctcggcaatatcggcttcaagagcgaagacgagccgggcgcc
gggtatctcggtgcgcgcggcatcaagttccacatctggccggggtcgtcgctgctgaaa
aaaccgggcaagtggatcatggcggccgaactggtcgataccacgcgcctgtatgcgcgc
tgcgtggcccgcatcgagccggagtggctggaaaaagtgggcggccacctgttgaaaaaa
tcgtggggcgagccgcgctgggaaaaacgctcggcgcaggtcaccgcgtctgaacgcgcc
acgctgtacgggctggttgtgtacagccagcgccgcatcaactacggcgccttcaacccg
gccgaggcgcgcgaaatcttcatccgcgacgcgctggtcggtggcgattacgacacgcgt
gcgccgttcttcgcccacaaccacaagctcatcaaggacatcgaaaacctcgaacacaag
tcgcgccgcctggacgtgctggtcgacgatgaactgatcgcggcgttctacgacaagctc
attcccgccgacgtggtcaacggcgccggttttgagaagtggcacaaggacgccaccgcc
gccgagccacggctgctgtacctcaatcgcgacgaactgatgcgccacgaagcggccggc
gtcaccaccgagctgttcccgaagatcatgtcggtcactggcctcgaactgggcctgacg
taccacttcgaaccgggcagcgtgcgtgacggcgtgaccctggccgtgccgctgtatgca
ctgaaccagttgccgcgcgagcgctgcgagtggctggtgccgggcatgctcaaggaaaaa
gtgcacctgctgttgaaatccttgccgcaaaagctgcgccgccactgcgtgccgctgccc
gactacgccgccaagttctgcgagcgcgtcaacgaagcgggcgtgttcggccgcggcgac
ctggtggacgccatcattgccgacatccgcaagcaattgacgattgccgtgctgaccacc
gacttcaagccggagaccttgcccgcccaccacttcatgaacttcaaggtgatcgacgag
catggccgccaactggacatgggccgcaacctggccaccttgcaagccgagttcggcatg
caggcgcgcgagagtttccagaagatggcggaaacgtcgggcaccacggtaacatccgcc
gccctgtcggctgcccagccgggtggcggcgccaagccagccgccggcggcaaggcaggt
gctgcggcgcccgtcactgcgacgggcggcaaggggggcagcggtgcggcgccacacggt
ggcgtggacgccgccgagccgtccaacctgaccaacctcagcaactggaccttcggcgaa
ctgcccgagctgctcgaaatcccgcaaggcaaactgacgctgatcggcttccccgcgctg
gtggacaagcgcacccactgcgacctcgaagtcttcgacgacccgaccgtggcagcgcgc
acccaccgccagggcctgcgccgcctgttcgcgctgcagatgaaagatcaaatcaagttc
atcgagaaaagcatcccgaacctgcagcaaatgggcatgcaatacatggcgatgggcacg
caggaagaactgcgcgacgagatcatcaacaaggcgctcgacatcgcctgcctgcaagac
ccgttgccgaccgacgctgccagtttcaccaaacgcaaggacgagggcaagtcgcgcctg
gtgctcttggtcaacgaagtggcgcgcctgctgtcgcaagtgctgaccgagttccacggc
ctgcccaagcgcctgcaaggcttgccgcaggcagcggccaccgatatgcagggccagttg
cagggcctggtgcacaagcgcttcctgtccgacaacgactacagccagctgtcacacttc
ccgcgctacctgaaggcgatgaacgtgcgcatcgaaaagctgcgcgccgaccccgcccgc
gacgccaagctgatggccgactggcaactggccgccacgccataccagcgtctgcaccgc
gacaagagcgccggcaagaacaccgacccgaaactggtcgagttccgctggatgctggaa
gaactgcgcgtctcgctattcgcccaggaactgcgcaccccgatgccggtgtcggtgaag
cgcctgcaaaaagtgtgggaatcgatgctacgctaa
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