Duganella zoogloeoides: SR858_06760
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Entry
SR858_06760 CDS
T09628
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dzo
Duganella zoogloeoides
Pathway
dzo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dzo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SR858_06760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dzo03019
]
SR858_06760
Enzymes [BR:
dzo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SR858_06760
Messenger RNA biogenesis [BR:
dzo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SR858_06760
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Sacchrp_dh_NADP
CMS1
Motif
Other DBs
NCBI-ProteinID:
WQH06033
UniProt:
A0ABZ0Y2T6
LinkDB
All DBs
Position
complement(1531329..1532828)
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AA seq
499 aa
AA seq
DB search
MPFSSLGLSDAIVRAVADTGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPLL
QLLSSSAVGKAFTTNSSPRAIRALILTPTRELAAQVEESVRIYGKYTKLNSAVIFGGVGI
NPQIKQLKHGVDILVATPGRLLDHMQQGTVDLSKVEVLILDEADRMLDMGFIRDIRKVLA
VLPPKRQNLLFSATFSDEIKALADGLLNNPATIEVARRNSTVEVIAQKIHPVDRDKKHPM
LAHLIKAHKWTQVLVFTRTKHGANNLVEKLGGDGITAMAIHGNKSQSARTRALSEFKDGT
LQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEHD
MLKDIEKLIKQTLPREVIPGFEPDLNARAQPIQLRSGGPGHRNGGGGGRGGNGGGRGKPA
GAGGNGGNGGGGKPRAPGAGAGASAGGGGRGGNGGGGNGGGARSGGGGGGQARTGGGGNG
SAPRNGANPSQHRSGGRGR
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgccattttcctcactcggtttgtccgacgctatcgtccgcgctgttgccgacaccggc
tacaccaccccgacaccgatccagacccaggccattcctgccgtcctgaacggcggcgac
ctgctggcaggcgcccagaccggcaccggcaagaccgccggcttcaccctgccgctgctg
caactgctgtcgtccagcgctgtcggcaaggcattcaccaccaatagctcgccgcgcgcc
atccgcgccctgatcctgaccccgacccgcgaactggcggcccaggtcgaggaaagcgtg
cgcatctacggcaagtacaccaagctgaactcggccgtgatcttcggcggcgtcggcatc
aatccgcagatcaagcaacttaaacacggcgtcgacatcctggtcgccaccccgggccgc
ctgctggaccacatgcagcaaggcaccgtggacctgagcaaggtcgaagtcctgatcctg
gacgaagccgaccgcatgctggacatgggcttcatccgcgacatcaggaaagtgctggcc
gtgctgccgccgaaacgccagaacctgctgttctcggccaccttctcggacgagatcaag
gcgctggccgacggcttgctgaacaacccggccaccatcgaagtggcgcgccgcaattcg
accgtggaagtgatcgcgcaaaagatccacccggttgaccgcgacaagaaacacccgatg
ctggcccacctgatcaaggcccataagtggacccaggtgctggtcttcacccgcaccaag
cacggcgccaacaacctggtggaaaaactcggtggcgacggcatcactgccatggccatc
cacggcaacaagagccagtcggcccgtacccgcgcgctgagcgaattcaaggatggcacg
ctgcaagtgctggtcgccaccgacatcgccgcgcgcggtatcgacatcgaccagttgccg
cacgtagtcaactacgacctgccgaacgtgccggaagactatgtacaccggatcggccgt
accggccgcgccggcgccaccggcgaagcggtgtcgctggtgtgtgtcgatgagcatgac
atgctcaaggatatcgaaaagctgatcaagcaaaccctgccgcgtgaagtgattcctggc
ttcgagccggacctgaacgcgcgcgcacaaccgatccagctgcgtagcggcggccctggc
catcgcaacggcggcggcggtggacgcggcggcaacggcggtggccgtggcaagccggca
ggcgccggtggcaatggcggcaacggcggtggcggaaaaccgcgcgcgcccggcgctggc
gccggcgcgtcggctggcggcggtggtcgcggcggcaacggtggtggcggtaatggcggc
ggcgcccgcagcggcggcggtggcggcggtcaagcccgcaccggtggcggcggcaacggc
agcgccccgcgcaatggcgccaacccgtcgcagcaccgctcgggtggccgcgggcgttaa
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