Duganella zoogloeoides: SR858_07830
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Entry
SR858_07830 CDS
T09628
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dzo
Duganella zoogloeoides
Pathway
dzo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dzo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SR858_07830 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dzo03019
]
SR858_07830 (rnr)
03016 Transfer RNA biogenesis [BR:
dzo03016
]
SR858_07830 (rnr)
Enzymes [BR:
dzo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SR858_07830 (rnr)
Messenger RNA biogenesis [BR:
dzo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SR858_07830 (rnr)
Transfer RNA biogenesis [BR:
dzo03016
]
Prokaryotic type
tRNA degradation factors
SR858_07830 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_RNR_1st
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
WQH06225
UniProt:
A0ABZ0Y2G5
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All DBs
Position
1756516..1758987
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AA seq
823 aa
AA seq
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MSQITHTIPSREEILGIFRSAQRSLDLLAVAKSLDVATDAQAVLSRRLNAMQRDGQIVVD
DAGNFTLAEDTGFIAGKVSSHRDGFGFVIPDEPGEDLFLPEKEMQKVLHGDRVMAKVVGV
DRRGRKEGTIVEVVSRANTHIIGRLLNENGTWVVAPEDQRIGQDVLVEGSVGKAKAGQVV
SVELTEQPMRFKQPVGKIVEILGSLDDPGMEIEIAVRKFNVPHVFSPAALKQANKLPDHV
READLGERVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRANGYRLIVAIADVSHYVKPN
DALDTDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPAVDRLTLVCDAVITAKGEIKAYQ
FYPAVIHSAARLTYTEVADILGDKQGPAAKRRPGLVPHLDNLYDVFQALLKARSERGAID
FETTETYIVSNPSTGKIEKIIPRTRNDAHRLIEECMLTANVCAADLLIRNKHPGTYRIHA
SPTAEKLKQVRTFLKQVNLTLEGGDKPAAGDYASLMRQIKERPDASLLQTMLLRSMQQAV
YSPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIKAILVGKKYEPKIPESSVLNTNVSN
ATRKQQAKDKAEGKEKKAADLTIWDALGVHCSANERRADEASRDVEAWLKCYFMQDKLGE
EFTGIITGVATFGIFVQLDQLFVEGMVHVTDLGSDYFQYDDARHELKGERTGKRFQLTDR
VTVQVVRVDLEMRKIDLRLSGPDAPPPKPEGSGNGGKDRNKTNIKPGPTTSQRHEVKATA
ADNNGGNKPKSRSRGGRSKNNAAASAPAAPQAAKPAAKSKKKR
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
ttgagccaaattacacacaccattccaagccgtgaggaaattctcggcatcttccgcagc
gcccaacggtcgcttgacctgctcgcggtagcgaagtcgctcgacgtagcgaccgacgcc
caggccgtgctgtcgcgccgcctgaacgccatgcagcgcgacggccagatcgtcgtcgat
gacgccggcaatttcaccctcgctgaagacaccggttttatcgccggcaaggtcagcagc
caccgcgacggtttcggcttcgtgatcccggatgagccgggcgaagacctgttcctgcca
gagaaagaaatgcagaaagtgctgcatggcgaccgcgtgatggccaaggtggtcggtgtc
gatcgccgcggccgcaaggaaggcacgattgtcgaagtcgtcagccgcgccaacacccac
atcatcggccgcctgctcaatgaaaacggtacctgggtggtggcgcccgaagaccagcgc
atcggccaggacgtcctggtcgagggttcggtcggtaaggccaaggccgggcaggtcgtc
agcgtggagctgaccgagcaaccgatgcgcttcaagcagccggtgggcaagatcgttgaa
atcctcggctcgctcgacgacccgggcatggagatcgaaatcgccgtgcgcaagttcaac
gtgccgcacgtgttttcgccagccgcgctcaagcaggccaacaagctgcccgaccacgtg
cgcgaagccgacctgggcgagcgcgtcgatctgcgcgacgtgccgctggtcaccatcgac
ggcgaagacgcgcgcgacttcgacgatgcggtctattgcgaaccggtcaagatcggccgc
gccaacggctatcgcctgatcgtcgcgattgccgacgtgagccactacgtcaagccgaac
gatgcgctcgataccgacgcactggagcgcagcacgtcggtgtacttcccgcgccgcgtg
atcccgatgctgccggaaaaactgtcgaacggcctgtgctcgctgaacccggccgtcgat
cgcctcacgctggtctgcgacgccgtgatcaccgccaagggcgagatcaaggcgtaccag
ttctacccggccgtaatccactcggccgcgcgcctgacctataccgaagtagccgacatc
ctcggcgacaagcagggaccggcagccaagcgccgcccgggcctggtgccgcacctggac
aacctgtacgacgtgttccaggccttgctgaaggcgcgcagcgaacgcggcgcgatcgac
ttcgaaaccaccgaaacctatatcgtcagcaatccatcgaccggcaagatcgaaaagatc
attccgcgcacccgcaacgatgcgcaccgcctgatcgaggaatgcatgttgaccgccaac
gtctgcgcggctgacctactgattcgcaacaagcacccgggcacgtaccgcatccacgcc
agccccaccgctgaaaagctcaagcaggtgcgcacgttcctcaagcaggtgaacctgacc
ctggaaggcggcgacaagccggccgccggcgactacgcgtcgctgatgcgccagatcaag
gagcgcccggacgcgtcgctgctgcaaaccatgctgctgcgctcgatgcagcaagccgtg
tacagccccgacaatatcggccatttcggcctggcttacgaggcgtatgcccacttcacc
agcccgatccgccgctaccccgacctgctgacgcaccgcgccatcaaggcgatcctggtg
ggcaaaaaatacgagccgaagattcccgagtcgagcgtattgaacaccaacgtctccaac
gccacgcgcaagcagcaggccaaggacaaggccgagggcaaagagaaaaaagctgccgac
ctcaccatctgggacgcgctgggcgtgcactgctcggccaacgaacggcgcgccgacgaa
gcgtcgcgcgatgtcgaagcctggctcaagtgctacttcatgcaggacaagctgggcgag
gaattcaccggcatcatcaccggcgtggccacgttcggcatctttgtccagctcgaccag
ctgttcgtcgaaggcatggtccacgtcaccgacctcggctccgactacttccagtacgac
gacgcccgccacgaactcaagggcgaacgcaccggcaagcgcttccagctgaccgaccgc
gtgaccgtgcaagtggtgcgcgtggacctggaaatgcgcaagatcgacctgcgcctgtcc
ggtcccgatgcaccgccaccgaagccggaaggcagcggcaacggcggcaaggatcgcaac
aagaccaacatcaagccgggcccgaccacgtcgcagcgccacgaggtgaaagccacggca
gcggataacaacggcggtaacaagcccaagtcccgttcccgtggcggccgcagcaagaac
aatgccgcggcgtctgccccggcagcaccccaggcagcaaaacctgccgcaaaaagtaag
aagaagcgataa
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