Duganella zoogloeoides: SR858_10535
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Entry
SR858_10535 CDS
T09628
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
dzo
Duganella zoogloeoides
Brite
KEGG Orthology (KO) [BR:
dzo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dzo03009
]
SR858_10535 (rimO)
Enzymes [BR:
dzo01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
SR858_10535 (rimO)
Ribosome biogenesis [BR:
dzo03009
]
Prokaryotic type
ribosomal protein modification factors
SR858_10535 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
YajR_YAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
WQH06735
LinkDB
All DBs
Position
2377247..2378650
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AA seq
467 aa
AA seq
DB search
MQSQPLSRITKPAAATTISGAAPKVGFVSLGCPKALVDSEQILTQLRAEGYETAKSYDGA
DLVIVNTCGFIDAAVQESLDAIGEALAENGKVIVTGCLGAKKDAAGDDIIMKVHPKVLAV
TGPHALAEVMDSVHFHLPKPHEPFIDLLPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPS
MRGDLVSRPIGELLLEAENLFKSGVKELLVISQDTSAYGVDVKFRTGFWNGRPIKTHMTQ
LMEALGELAKSHGAWVRMHYVYPYPHVDQVIPMMGEHVLPYLDIPMQHAHPDVLKRMKRP
ASGEKNLDRILAWRKMNPDLTIRSTFIAGFPGETEEEFQYLLDFLKEAQIDRLGCFAYSP
VEGATANELANPVPEEVREERRGRVMLLQEEISKNRLKAKVGKTVRVLIDEVNRTGGVGR
SAADAPEIDGVVYVKPPYEPHKKLVVGQFVDVRITTSDAHDLWGEAQ
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcgcaaccactttcccgtatcaccaagcctgcagcagccaccaccatcagcggt
gcggcgcccaaagtcggctttgtctcgctcggctgccccaaggcgctggtcgattccgaa
caaatcctgacccagctgcgcgccgagggctacgagactgccaagtcctatgacggcgcc
gacctggtgatcgtcaacacctgcggcttcatcgacgcggccgtgcaggagtcgctcgac
gccatcggcgaagcgctggccgaaaacggtaaagtcatcgtgaccggttgcctcggtgcg
aaaaaagacgccgccggcgacgacatcatcatgaaggtgcacccgaaggtgctggccgtg
accggcccgcacgcgctggccgaagtaatggactcggtccacttccacctgcccaagccg
cacgagccgttcatcgacctgctgccgccgcaaggcatcaagctcacgccgaagcactac
gcgtacctgaaaatctccgagggctgcaaccaccgctgctcgttctgcatcatcccgtcg
atgcgcggcgacctggtgtcgcgcccgatcggcgagctgctgctggaagcggaaaacctg
ttcaagtccggcgtcaaggaactgctggtgatttcgcaggatacctcggcctacggcgtt
gacgtcaaattccgcaccggcttctggaacggccgcccgatcaagacccacatgacgcag
ctgatggaagcgctgggcgagctggccaagtcgcacggcgcctgggtgcgcatgcactac
gtgtacccgtacccgcacgtggaccaggtgatcccgatgatgggcgagcacgtgctgccc
tacctcgacatcccgatgcagcacgcgcatcccgacgtgttgaagcgcatgaagcgtccg
gccagcggcgagaaaaacctcgaccgcatcctggcctggcgcaagatgaacccggacctg
accatccgctcgacctttatcgccggtttcccgggcgagaccgaagaagagttccagtac
ctgctggacttcctcaaggaagcgcagatcgaccgccttggctgcttcgcctattcgccg
gtggaaggcgccaccgccaacgaactggccaacccggtaccggaggaagtgcgcgaagaa
cgccgtggccgcgtgatgctgctgcaggaagaaatctcgaagaaccgcctgaaggccaag
gtcggcaagaccgtgcgcgtgctgattgatgaggtcaaccgcactggcggcgtcggtcgc
tcggcagccgatgcgcccgaaatcgacggcgtggtgtacgtgaagccaccgtacgagccg
cacaagaagctggtcgtcggccagttcgtcgatgtgcgcatcacgacttccgacgcgcat
gacctgtggggcgaggcgcaataa
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