Duganella zoogloeoides: SR858_10555
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Entry
SR858_10555 CDS
T09628
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
dzo
Duganella zoogloeoides
Pathway
dzo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dzo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SR858_10555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dzo03400
]
SR858_10555
Enzymes [BR:
dzo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
SR858_10555
DNA repair and recombination proteins [BR:
dzo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SR858_10555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
WQH06739
LinkDB
All DBs
Position
2382226..2383668
Genome browser
AA seq
480 aa
AA seq
DB search
MTRRVVQTFAEWRTAARDLVARSIAPEYVEWASEPEDGDLFSGFGSQAGAAALKAAPPPG
TELRLPRQLMDMIEDAACFNALDRWSFLYKVIWRWHLGERDVVSPADADGARLYAMAKAV
HREQHDMHAYVRFRERKEQDGAPRFVAWFEPTHDVLPQVARHFARRMGPITWMIATPNQA
ILWDGEKLIEAPSLLRTAADIEDAGEALWLTYYRSIFNPARVNADLLRSHIPSRFWKNLP
EGAIVPAMVTAANNGERRTGQTGTVGQRGGATSIPIAPERAQPQREVPTSLDQCRRCTLW
ENATQVVAGVGPAQARIMLVGEQPGDQEDLQGLPFVGPAGAVLQQAMQEAGVDRDSIYLT
NAVKHFKWEPRGKRRLHKTPAQREVAACHLWLEEELKRVQPQVVVALGSTALKSLLQDGS
ATMTSMMNDGHPAPVQHDGRWVVTVYHPSYVLRAPDEAARRQAYGVIVEGLRQALQLVGR
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgcagggtggtccagacgtttgccgaatggcgcacggccgcacgcgacctggtg
gcgcgcagcatcgcgcccgagtacgtggagtgggccagcgagccggaagacggcgacctg
ttctccggcttcggctcccaggccggcgcggcggcgctcaaggctgcgccgccgccgggc
accgagttgcgcctgccgcgccagctgatggacatgatcgaggacgccgcctgtttcaat
gcgctcgaccgctggtcgtttttatacaaggtgatctggcgctggcatttgggcgagcgc
gacgtggtgtcgccggccgatgccgacggcgcccgcctgtacgcgatggccaaagccgtg
caccgcgagcagcacgacatgcatgcctacgtgcgcttccgcgagcgcaaggagcaggac
ggcgccccgcgcttcgtggcctggttcgaacccacccacgacgtactgccgcaggtggcg
cgccatttcgcccgccgcatggggcccatcacctggatgatcgccacgccgaaccaggcc
atcctgtgggacggcgaaaaattgatcgaagcgccgtcgctgctgcgcaccgcagccgat
atcgaggacgccggcgaggcgctgtggctcacctattaccgcagcatcttcaacccggcg
cgcgtcaatgccgacctgctgcgcagccatatcccgtcgcggttctggaagaatttaccg
gaaggcgcgatcgtgccggccatggtcaccgccgccaacaacggcgagcgccgcaccggc
cagaccggcaccgtgggccagcgcggcggcgccaccagcatcccgatcgcaccggaacgc
gcgcagccgcagcgcgaggtacccacgtcgctcgatcagtgccgccgctgcacgctatgg
gaaaatgccacccaggtcgtggctggcgtaggaccggcgcaggcgcgcatcatgctcgtc
ggcgagcagccgggcgaccaggaggatttgcagggtttgccgttcgtggggccggccggc
gcggtgctgcaacaggcgatgcaggaggccggggtggaccgcgacagcatttatctgacc
aacgccgtcaagcatttcaagtgggagccgcgcggcaagcggcgcctgcacaagacgccg
gcgcagcgcgaggtggccgcgtgccacctgtggctggaagaggagctgaaacgggtacaa
ccgcaagtggtggtggcgctgggcagcaccgcgctgaaatcgctgctgcaggacggctcg
gccaccatgacgtcgatgatgaacgatggccacccggcgccggtgcagcacgacgggcgc
tgggtggtcaccgtctatcacccgtcatacgtactgcgcgcgcccgatgaagcggcgcgg
cgccaggcctacggcgtgatcgtcgaaggcctgcgccaggcgctgcaactggtcgggcgt
tag
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integrated database retrieval system
