Duganella zoogloeoides: SR858_10575
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Entry
SR858_10575 CDS
T09628
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dzo
Duganella zoogloeoides
Pathway
dzo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dzo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SR858_10575 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dzo03400
]
SR858_10575 (mfd)
Enzymes [BR:
dzo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SR858_10575 (mfd)
DNA repair and recombination proteins [BR:
dzo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SR858_10575 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
AAA_30
AAA_25
CTE_SPB4
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WQH06743
LinkDB
All DBs
Position
complement(2385919..2389365)
Genome browser
AA seq
1148 aa
AA seq
DB search
MSLVLANSIPKPGNRFALPTLHGSSDAYALAQAALALKAQGRMLAVITSSAADAQRLRDE
IPWFAGDEVRCHLLPDWETLPYDAFSPHQDLVSERLATLHEISSGQCDVMLVPATTALVR
MAPPSFLAAYTFFFKKGESLDEARLKSQLTLAGYTHVTQVMSPGEYSVRGGLIDLFPMGS
ALPYRLDLFGDTVETIRTFDADTQRSLYPVGEVRLLPGREFPMDEAARTTFRSRWREYFE
GDPSRSVVYKDISSGIASAGIEYYLPLFFEETATLFDYLPDGAALALVGDIDAAIKRFWA
DTTSRHRFLKADRERPILPPDMLFLSDEQFFTLAKPYGRMVISKDPDQGASELSAPIPNI
AVNRHLEDPLTNLRSYLLQAGTRVMICAETNGRRETLQQYFSEYDLALTPVEGFEGFATS
DAKLALGVAPLHAGFELATPAERLVFITETELYAGSGRRVGKKKQEAVTQVESMVRDLSE
LKIGDPVVHVNHGIGRYMGLTSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGAA
PEDAPLHTLGSGQWEKAKRRAAEQIRDTAAELLNLYARRALRQGHAFEYSAHDYERFAES
FGFDETPDQQEAINNVIRDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAILA
PTTLLAEQHAQTFADRFADWPVRIAEMSRFRTGKEINQAIKGMADGTLDIVIGTHKLLSD
DVKFTRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLREFSII
ATAPQKRLAIKTFVRSEGESIIREACLRELKRGGQVYFLHNEVETIQNRLAMLTELLPEA
RIAVAHGQMHERDLEKVMRDFVAQRYNILLCTTIIETGIDVPTANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVTDVQGLSKQAQRRLDAIQQMEELGSGFYLAMHDLEIRGAG
EVLGDNQSGEMTEIGFQLYTDMLNEAVRSLKAGKEPDLAAPLSTTTEINLHTPALLPSDF
CGDVHERLSIYKRMANCTVQDKIDDLQEELIDRFGKLPDPVKALIETHRLRIAAKTVGII
KIDAHGEAASLQFMAKPPIDPMRIIELIQKNRQIKLAGQDKLKITAAMPDLAARVAQIKG
AIKQLTGN
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
gtgtccctagtcctcgccaactccattccaaaaccgggcaaccgctttgccctgcccacc
ctgcacggctcctcggatgcgtacgcgctcgcgcaagcggcgctcgccctcaaggcgcaa
ggccgcatgctggccgtgatcacgtccagcgcggcggacgcccagcgcctgcgcgacgaa
attccatggttcgcgggcgacgaagtgcgctgccacctgctgccggactgggaaacgctg
ccctacgacgccttctcgccgcaccaggacctggtgtccgagcgcctggccacgctgcac
gaaatctccagcggccagtgcgatgtgatgctggtgccggccaccaccgcgctggtgcgc
atggcgccgccgtcgttcctggcggcgtacacgttcttcttcaagaagggcgagtcgctc
gacgaagcgcgtttgaagtcgcaactgacgctggctggctatacccacgtcacgcaggtg
atgtcgcccggcgaatactcggtgcgcggcggtctgatcgacctgttcccgatgggctcc
gccctgccctaccggctcgacctgttcggcgacacggtggaaaccatccgcacttttgac
gccgacacccagcgctcgctgtacccggtcggtgaagtgcgcctgctgccgggccgcgaa
ttcccgatggacgaagcggcgcgcaccacgttccgcagccgctggcgcgaatatttcgaa
ggcgatccttcgcgctcggtcgtttataaagacatcagcagcggcatcgcctcggccggt
atcgagtactacctgccgctgttcttcgaagagaccgccacgctgttcgactacctgccc
gacggcgccgcgctggccctggtcggcgacatcgacgccgccatcaagcgcttctgggcc
gataccacctcgcgccaccgcttcctgaaagccgatcgcgaacgcccgatcctgccgccc
gacatgctgttcctgtcggacgagcagttcttcaccctggccaagccgtatggccgcatg
gtgatctcgaaagacccggaccagggtgcatcggagctgtcggcgcccatcccgaacatc
gccgtcaaccgccacctggaagacccgctcaccaacctgcgcagctatctgctgcaggcg
ggcacgcgggtgatgatctgcgcggagaccaacggccgccgcgaaacgctgcagcagtac
ttcagcgagtacgacctggccctcacgccggtcgaaggtttcgaaggctttgccacgtcc
gacgccaaactggcgctgggcgtggcgccgctgcacgcaggcttcgaactggccacgccg
gccgaacggctggtgttcattaccgagaccgagctgtatgcgggttccggccgccgggtg
ggcaagaagaagcaggaagcggtcacgcaggtcgaatcgatggtgcgcgacctgtccgag
ctgaagatcggtgaccccgtggtgcacgtcaatcacggcatcggccgctacatgggcctc
accagcatggacctgggcgaaggagagaccgaattcctgcacctggaatacgccaaggac
accaagctgtatgtgccggtctcgcagctgcacgtaatctcgcgctactcgggcgccgcg
cccgaagacgcaccgctgcacacgctcggttccggccagtgggaaaaggccaagcgccgc
gcggccgaacagatccgcgacaccgctgccgagctgctcaacctgtacgcccgccgcgcg
ctgcgccagggccacgcgttcgaatactcggcgcacgactacgagcgcttcgccgagagc
ttcggcttcgacgaaacgcccgaccagcaggaggcgatcaataacgtcatccgcgacatg
acgtccggtaaaccgatggaccgcctggtgtgcggcgacgtcggcttcggcaagaccgaa
gtcgcgctgcgcgccgcgttcatcgcggtcatgggcggcaagcaggtggcgattctcgcc
ccgaccacgctgctggccgaacagcatgcgcaaacctttgccgaccgctttgccgactgg
ccggtgcgcatcgccgagatgtcgcgcttccgcaccggcaaggaaatcaaccaggccatc
aagggcatggccgacggcacgctcgatatcgtgatcggcacccataaactgctgtcggac
gatgtgaagttcacgcgcctgggcctggtcatcatcgacgaggaacaccgcttcggcgtg
cgccagaaggaggcgctcaagtcgctgcgggccgaagtcgatgtgctcacgctcaccgcc
acgccgatcccgcgcacgctgggcatggcgctcgaaggcctgcgcgagttttccatcatc
gccaccgcgccgcaaaagcggctggccatcaagacgttcgtgcgcagcgagggcgagtcg
atcatccgcgaggcctgcctgcgcgagctcaaacgcggcggccaggtgtacttcctgcac
aacgaggtggaaaccatccagaaccgcctggcgatgctcaccgaattgctgcccgaggcg
cgcatcgcggtggcccatggccagatgcacgagcgcgaccttgaaaaagtgatgcgcgac
ttcgtggcgcagcgctacaacatcctgctgtgcaccacgattatcgaaaccggtatcgat
gtgcccaccgcgaacaccatcatcatgcaccgcgccgacaagttcggcctggcgcagctg
caccagctgcgcggccgcgtgggccgctcgcaccaccaggcgtatgcctatttgctggtc
accgacgtgcagggcctttccaagcaggcgcagcgcaggctcgatgccatccagcagatg
gaagaactgggcagcggcttctacctggccatgcacgatctcgaaattcgcggcgccggc
gaagtcctcggcgacaaccagtccggcgagatgaccgaaatcggcttccagctgtacacc
gacatgctgaacgaagcggtacgttcgctcaaggccggcaaggaaccggatctggctgcc
ccgctgtccacgaccaccgaaatcaacctgcacacgccggcactgctgccgtccgacttc
tgcggcgacgtgcacgaacggctgtcgatctacaagcgcatggccaactgcacggtccag
gacaagatcgacgatttgcaggaagagctgatcgaccgtttcggcaagctgcccgacccg
gtcaaggcgctgatcgaaacccaccgcctgcgcatcgccgccaagaccgtgggcatcatc
aagatcgacgcccacggcgaagcggccagcctgcagttcatggccaagccgccgatcgac
ccgatgcgcatcatcgaactgatacagaaaaatcgccagatcaagctcgccggccaggac
aaactgaagattacggccgccatgccggacctggctgcgcgggtcgcccagatcaaaggt
gcaattaaacaactcactggcaactaa
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