Duganella zoogloeoides: SR858_10850
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Entry
SR858_10850 CDS
T09628
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dzo
Duganella zoogloeoides
Pathway
dzo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dzo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SR858_10850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dzo03019
]
SR858_10850
Enzymes [BR:
dzo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SR858_10850
Messenger RNA biogenesis [BR:
dzo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SR858_10850
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WQH06798
UniProt:
A0ABZ0Y507
LinkDB
All DBs
Position
complement(2457537..2459060)
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AA seq
507 aa
AA seq
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MTFQALGLIAPLLQTLDTLGYKQPTPVQKQAIPAVLAGRDLMAAAQTGTGKTAGFALPIL
QRLTLEGENAPTAVRCLVLAPTRELAEQVFESFRSYGGNLPLRAAVAYGGVPIEPQIAKL
RKGLDVLVATPGRLIDLLDQGAVSFKQLQTLVLDEADRMLDLGFERDLDILLAALPKQRQ
TLLFSATFSDEIRKLTKGLLKDPVTVQVEASNSITKSVRQWLIPTDKRRKPDLLLHLLAK
FGWRQVLVFVKTRKGAELLVKTLHDHGITADTIHGDKTQPARLKALARFKKAEVQLLVAT
DVAARGLDIEALPQVVNFDLPSVAEDYIHRIGRTGRAGLEGEAISLVCADEADMLKAIET
MTRQVIARFEEPGFEADHRVPETAPAAAAAAAAKKAAAAAPGKKKRPFTGPAGGKSAARA
LSAAPSPAAGRGGKATASAGGAKAAARSPSGPVSGGGKPASRSLTKAAAPKGAVVVTGGR
GAKSLARAAGKVTAQAGNRKPKAGPRS
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgactttccaagcactgggcctgatcgcccccctcctgcaaacgctggacaccctgggc
tacaagcagccgacgccggtccagaagcaggcgattcccgccgtgctggcgggccgcgac
ctgatggccgccgcccaaaccggcaccggcaagaccgccggcttcgccctgcccatcctg
caacgcctgactctggaaggcgaaaacgcgcccacggccgtacgctgcctggtgctggcc
cctacccgcgaactggccgaacaggtgttcgagagcttccgcagctacggcggcaacctg
ccgctgcgcgcggctgtcgcctacggcggcgtgccgatcgagccgcagatcgccaagctg
cgcaaggggctcgatgtgctggtggccacgcccggccgcctgatcgacttgctcgaccag
ggcgcggtgagcttcaagcagctgcaaacgctggtgctcgacgaagcggaccgcatgctt
gacctggggttcgagcgcgacctcgacatcctgctggcggcgctgccaaaacagcgccag
accttgctgttctcggccacgttctcggacgagatccgcaagctgaccaagggcctgctc
aaagacccggtcaccgtgcaggtcgaggccagcaattcgatcaccaagtcggtacgtcaa
tggctgatcccgaccgacaagcgcaggaagcccgacctgctgctgcacctgctggccaaa
ttcggctggcgccaggtgctggtgttcgtcaaaacccgcaagggcgccgagctgctggtc
aaaaccctgcacgaccacggcatcacggccgacaccatccacggcgacaagacccagccg
gcgcgcctgaaagccctggcccgcttcaaaaaggccgaagtgcagctgctggtggccacc
gacgttgccgcgcgcgggctcgatatcgaggcgctgccgcaggtggtcaatttcgacctg
ccctcggtggcggaagattacatccaccgcatcggccgcaccggccgcgcgggcctcgaa
ggcgaagcgatctcgctggtgtgcgctgacgaggcagacatgctgaaagccatcgaaacc
atgacacgccaggtgatcgcgcgcttcgaggagccgggcttcgaggctgatcaccgcgtg
ccggagacggcgcctgccgctgcggcggcagcagcggctaaaaaagctgctgcggcggcg
ccgggcaagaagaagcggccgtttaccgggccggcgggtggcaagtcggcggcgcgtgcg
ctttcagcggctccttcgcctgcggctggtcgcggcggcaaggcgacggcatcggccggc
ggcgccaaagcagcggcgcgctcgccgtccggcccggtctcgggcggcggcaaacccgcg
tcccggtcgctgacaaaggctgctgcgcctaagggcgcggtcgtggtcaccggaggacgt
ggcgccaaatcgctggcgcgcgctgccggcaaggtcacggcacaggcaggaaaccgcaag
ccgaaggccggcccccgctcctga
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