Endosymbiont of Acanthamoeba sp. UWC8: I862_03550
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Entry
I862_03550 CDS
T03255
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
eaa
Endosymbiont of Acanthamoeba sp. UWC8
Pathway
eaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I862_03550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eaa03021
]
I862_03550
03400 DNA repair and recombination proteins [BR:
eaa03400
]
I862_03550
Enzymes [BR:
eaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I862_03550
Transcription machinery [BR:
eaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I862_03550
DNA repair and recombination proteins [BR:
eaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I862_03550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AIF81270
UniProt:
A0A075MJR7
LinkDB
All DBs
Position
complement(723070..727284)
Genome browser
AA seq
1404 aa
AA seq
DB search
MSNFGYFGLANSRQEFDEIKISIVNPEQIRAWSFGEVKKPDTVNYRTIKPENGGLFCARI
FGPIKDYECLCGKYKRMKYRGIVCEKCGVEVTTSKVRRERMGHIELASPVVHIWFLRSLP
SKISNLLDIPIKDIEKVLYFESYIVIDPGMANLQYGQLLNDDEFYQAQDDFGEDSFEASM
GAEAVKRLLQKLDLEEEKNRLRGELKDVFSETKRKKIAKRLKLIEEFIESGNKPEWMVLE
ALPVISPDLRPLVMLDGGRFATSDLNELYRRLINRNNRLKRLIELKAPDIIVRNEKRMLQ
EAADALFDNGRKGRAVKNSNKRPFKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYSKLEMYGIATTLKSAKKMVELEKPEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQLEA
RALMMSTNNILSPANGKPIIVPSQDIILGLYYMTIQLDNEKGEGMAFVDVAEIEHALHAG
TLSLHAKIKARRKKIDSNGNITTFIAETTPGRVILSELLPKDANMSFDLVNRVITKKEVS
KLIDAVYRHCGQKATVIFSDQLMQLGFSNACISGISFGKDDIVIPETKEKHIQETLSEAR
QYESQHADGLITSGEKYNKVVDAWSRCTDRVANDMMKIISSKPKSNNDNTPGQLKINSIF
MMADSGARGSAAQLRQLAGMRGLMTKPSGEIIENPITSNFKEGLTELEYFISTHGARKGL
ADTALKTANSGYLTRKLVDVAQDCIIVENDCGTQNGIVAKPIIEAGEVVVQLSEAILGRV
AITDVFHPTSGELITKANEMITEAVVERIDEAGVDRIKVRSVLTCESKGGVCAKCYGRDL
ATGDMVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQKGAVQSSAIASHEGNIKVLHK
NIVTDSQGKKIIMSRSCEVLIFDDKGSEKASFKVPYGAKLLVDDDTRVKPGQKMAEWDPY
TIPIITEKSGRATFADLMSGVSLKEVLDETTGVSNRVVIDWKQQARGSELRPRILLQDEE
GNVITLANGLEARYFLPVDAILSVSDNQYVNAGDVIARIPKESSKTKDITGGLPKVVERF
EARKPKDHSLISESDGYIEFGKDYKSKRRIIVRSKDTALEPVEYFIPRGRHITVNEGDFV
SKGDMLMEGNPSPHDILRIMGVEALSTYVVNEVQQVYRLQGVKIDDKHIEVILRQMLQKV
EITDPGETTFLTGEQVDREEFEIVNNKALEQGYMPAVAIPILQGVTKASLQTRSFFSAAS
FQETTRVLTDAAVAGKIDKLQGLKENIIVGRLIPAGTGFYTNVIKKAAYKRDKDFAIANQ
VTHSTGSENEENSSDQENLKNAAN
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgagcaattttggatattttggattggcaaatagtcgccaggaatttgatgaaataaaa
atttcaatcgtaaatcctgagcagattagagcgtggtctttcggagaagttaaaaagccg
gatacggttaactatagaacaatcaagcctgaaaacggcgggttgttctgcgcccgtatt
tttggtccgatcaaagactatgaatgcctatgcggaaaatataaaaggatgaagtataga
ggtatcgtatgtgaaaaatgcggtgttgaagtaactacctctaaagtaagacgtgaaaga
atggggcacattgagcttgcgagcccggttgtgcatatttggttcttgcgttcgctacct
tccaaaatcagcaatttgcttgatatcccgattaaagacatcgaaaaagttctctatttc
gaatcatatattgtgattgatccgggaatggctaatttacaatatggccaacttctgaat
gatgatgaattctatcaagctcaagatgacttcggtgaagattcttttgaagcatcaatg
ggtgcggaagcagttaaaagattattgcaaaaattagatctagaagaagaaaaaaatagg
ttaaggggagaattaaaagatgttttctctgaaactaagcgtaaaaaaatagctaaaaga
cttaagcttattgaagaattcatagagtcgggtaataaacctgaatggatggttttagaa
gctcttccggtaatttctcctgatttaagaccgcttgtaatgcttgacggcggaagattt
gcgacctccgatcttaacgagttatatagaaggctaattaatagaaataaccgacttaaa
cgcttaatcgagcttaaagcgcctgatattattgtacgtaatgaaaaaagaatgcttcaa
gaagcagctgatgcgttatttgacaacggtagaaaaggaagagctgttaaaaattccaac
aaacgtccgtttaagtctttagcggatatgctgaaaggtaagcaaggaagatttagacag
aacttacttggtaagcgtgttgactactcaggtcgttcggtaatcgttgtcggcccggaa
ctaaaattacatcagtgcggattacctaaaaaaatggcattagaattatttaagccgttt
atttattccaagcttgaaatgtacggaattgcaaccacgcttaaatccgctaaaaaaatg
gtggaattggaaaaacctgaggtgtgggatattttagaagaagttatcagagagcacccg
gtgttattaaaccgtgccccaacccttcacaggctcggtatccaagcatttgaaccccta
ctcattgaaggtaaagctatacaattacaccctctcgtatgcgcagcattcaatgctgac
tttgatggtgaccagatggcggttcacgttccgctttcaattgaagctcagcttgaagca
agagcgcttatgatgtctactaataacattttaagcccggccaatggtaagccgataatt
gtacctagccaggatattattttagggctttactatatgactatccagcttgataatgaa
aaaggcgaggggatggcatttgtggatgtagctgaaatagagcatgcattgcatgccgga
acattatcattacatgcaaaaattaaagccagaagaaaaaaaattgatagcaacgggaat
ataactacttttattgcagagactactccgggaagagttattttatccgagctactgcca
aaagatgcaaatatgagctttgatttagttaatagagttattactaagaaagaagtttct
aaattaattgatgcggtttataggcactgtgggcaaaaggcgaccgtaatattttccgat
caacttatgcagctcggatttagcaacgcttgtatctcgggtatttcattcggtaaagat
gatattgttatacctgaaactaaagagaagcatattcaagaaacactaagtgaagcaagg
caatatgaaagtcaacatgctgacggcttgattaccagcggtgaaaaatataacaaagta
gttgatgcttggtctcgttgtaccgaccgagttgcaaatgatatgatgaaaattatatca
agcaagccgaagagcaataacgataacactcccggccagctgaaaatcaacagtatattt
atgatggcggattcaggagctaggggttcagctgcgcagctaaggcagcttgcagggatg
agagggcttatgactaagccgtcgggtgaaattattgaaaacccgattacttctaacttt
aaagaaggtttaaccgagcttgaatactttatttcaactcacggggcaagaaaaggattg
gcagatacggctttaaaaactgctaactctggatacttaaccagaaaattagtagatgta
gcacaggactgtattattgttgagaacgattgcggaactcaaaacggtatagtagctaaa
ccgatcattgaagcaggtgaagtcgtcgttcaactttccgaagccatacttggaagagtt
gcgattactgatgttttccatccgacaagtggtgagttaatcactaaagctaacgaaatg
atcaccgaagcagtagttgaaagaattgacgaagcaggggttgatagaattaaagtcaga
tccgtacttacctgtgagagtaaaggcggagtatgcgctaagtgttacggtcgagatctt
gctactggagatatggtaaatatcggtgaagcagtgggcgtaattgctgctcaatcgatc
ggagagcccggaactcaattaactatgagaacgttccacatcgggggagctgcgcaaaaa
ggtgcagttcaatcatcggcaatagcttcacatgaagggaatattaaagtactgcacaaa
aatatcgtaacggatagccaaggtaaaaagattattatgagccgaagctgtgaggtatta
atatttgatgataagggaagtgagaaggcaagctttaaggttccatacggcgccaaatta
ttagtcgatgatgacacaagagttaagccgggtcagaaaatggccgagtgggatccgtat
accattccaattattactgagaaatcaggtagagcgacttttgcagatttaatgtcaggt
gtttcattaaaagaagtattggatgaaactaccggagtaagtaacagggttgtaatagat
tggaaacagcaagctagaggttctgaactaagaccgagaattttacttcaggatgaagaa
ggaaatgttattaccttagctaacggattggaagccagatacttcctgcctgtagatgcg
atcttaagtgtaagtgataatcaatatgttaatgcgggtgacgttattgctcgtataccg
aaagaatcttcgaaaactaaggatattaccggtggtcttccaaaagttgtggaaaggttt
gaagcaaggaaaccgaaagatcactccttaattagtgaaagtgacggttatattgaattc
ggtaaagactataaatctaagcgtagaattatagtaagatcaaaagatactgcacttgag
cctgtagagtatttcattccgagaggcagacacattacggttaatgaaggagactttgtt
tctaaaggtgatatgttaatggaaggaaatccatctcctcatgatattttaagaattatg
ggtgttgaggctctttctacttatgtggtgaatgaagtacagcaagtatataggttacag
ggtgtaaaaattgacgataagcacattgaagttattttaagacaaatgttgcaaaaagtt
gaaattactgatccgggtgaaactacattcttgaccggagaacaggttgatcgtgaagaa
tttgagattgtaaataacaaagctttagagcaaggttatatgcctgcggttgctatcccg
attttacaaggggtaaccaaagcttcgttacagactcgttcattcttctcggctgcttca
ttccaagaaaccaccagagttttaaccgatgcggcggttgcaggtaaaattgataagctt
caaggcttgaaagaaaacattattgtaggtaggctgattcctgcgggaaccggtttttat
actaatgtaatcaaaaaagctgcttacaaacgggataaagattttgctatagcaaaccag
gttacacatagcacaggttctgaaaatgaagaaaattcttcagatcaggaaaatttaaag
aatgctgctaactag
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