Endosymbiont of Acanthamoeba sp. UWC8: I862_03555
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Entry
I862_03555 CDS
T03255
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
eaa
Endosymbiont of Acanthamoeba sp. UWC8
Pathway
eaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I862_03555 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eaa03021
]
I862_03555 (rpoB)
03400 DNA repair and recombination proteins [BR:
eaa03400
]
I862_03555 (rpoB)
Enzymes [BR:
eaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I862_03555 (rpoB)
Transcription machinery [BR:
eaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I862_03555 (rpoB)
DNA repair and recombination proteins [BR:
eaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I862_03555 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
DUF3008
SCAF11-like_C
Motif
Other DBs
NCBI-ProteinID:
AIF81271
LinkDB
All DBs
Position
complement(727317..731417)
Genome browser
AA seq
1366 aa
AA seq
DB search
MVSLTAKKRIRKSFGRIKSVAEIPNLIHVQKASYEDFLQLNNRSDNREEKGLESVFKSIF
PISDYEGQATIEYVKYELDRPKYDVEECIQRGVNYAAPLRVTLRLIVWDIDEEAGIKEIK
GIKEQDVYMGEIPLMTDRGTFIINGAERVVVSQMHRSPGVFYFHDGGKTHSSGKYLFYAR
VIPYRGSWLDIEFDVKDLLYFRLDRKRKIYITTLLRALNLSKDDILNEFYKIISYYKKGE
AWVAKFTTEKFKGAKVAFDIVDYATGEVIIEANTKVTPRVAKKIAEAGGEREYIVPKDQL
IGSYIAQDIIDEETGEIIIESGDEINEAILEKIDGIKVQELNILDVDYVKVGPYIRNSLV
LDKNLTKEDALSDIYKVMRPGEPSTPEAAEALFRSTFFEKEKYDLSPIGRMKINAKHDLK
IPEDHSVLTKEDIIAIVKHIIKLKDGFGEVDDIDNLGNRRVRSVGELVENQFRLGLVRME
RTIMERMASVEIDTVMPHDLINSKVLMSVLREFFGTSQLSQFMDQTNPLSEITHKRRLSA
LGPGGLTRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLASYARVNKYGFIESPYR
KVVEGKVTDEVHYLSAIEESKYVIAQANAKLNKDGTFAEELVRSREDGEIIVATPDKMNY
MDVSPQQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKSEAPLVGTGMEGVVASDS
GATVVARRDGVVDRVDANRIVVRSQEHAEDAPGVDIYTLVKYQKSNQNTCINQRPVVKVG
DIVKSGDIIADGPSTDLGELALGKNVLAAFMPWNGYNYEDSILLSERLVKEDVFTSIHIQ
EFEVVARDTRLGPEEITRDIPNVGEESLKHLDEIGVVHVGAEVKPGDILVGKVTPKSESP
ITPEEKLLRAIFGEKAADVRDSSLRVPPGAKGTVVSVRVFTRRGVEKDERAIALERHEIE
RLSKDRDDELNILQNYAFGRVKELLLNNTIVSAPKPLKQGDTITENTFNEIPKRMIWQIV
VDDTTAMNQLEKIKSIYDQYIEKLEDRFKKKVEKVQSGDDLPQGALKVVKVYLATKLKIQ
PGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTPVDLVLNPLGVPSRMNVGQILETHLGWAS
ANLGRQIGAILDKLEERKNIEELRSKLDEIYASEVNQNDQDLIASMNEDELKELAGNLTK
GVPYATPVFDGAKEEDITKALQKAGVNVSGQATLIDGRTGISFDRKITVGYIYMMKLDHL
VDDKIHARSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDV
TGRIKMYEAIVRGDVSFESGVPESFNVMVKELSALGLNVEKRKSEE
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
gtggtaagcttaacagctaaaaaaagaattagaaaaagctttggcagaatcaaatcagtt
gctgaaattccaaacctaatacatgttcaaaaagcctcttatgaggattttttgcaatta
aataatagatcagataatcgtgaagaaaaagggcttgaatcagtttttaagtcaatattt
cctatttccgattatgaaggtcaggcgactattgaatatgtaaagtatgagttggatcga
cctaaatatgatgttgaagagtgtattcaaaggggggttaactatgctgcacctcttaga
gttaccctaagactgattgtatgggatattgatgaagaagccggtattaaagaaataaaa
ggcatcaaagagcaagatgtttatatgggtgaaatccctcttatgactgataggggaact
tttatcattaatggtgcggagcgcgtagtagtctctcaaatgcatcgttcgccaggggtg
ttttattttcatgacggcggtaaaactcatagttcaggaaaatatttattttatgctcga
gttataccttatagaggttcatggttagacattgaatttgatgttaaggatctgctctat
tttaggcttgatagaaagagaaaaatttacattacaactcttttacgcgctcttaatctt
tcgaaagacgatattttaaatgaattctataaaattatcagttattataaaaagggagag
gcttgggtagctaaattcactaccgagaaattcaaaggtgccaaagtagcttttgatata
gtagattatgccaccggtgaagttattattgaagctaataccaaagttactccgagagtg
gctaagaaaattgccgaagccggcggagaaagggaatatattgttcctaaagaccagctt
atcggatcctatattgcccaagatattatagatgaagaaaccggggagattattattgaa
tccggtgatgaaattaatgaagctattttagagaaaattgacggaattaaagttcaagaa
ttaaatattctggatgttgattacgttaaagtcgggccatacatcagaaattctttagta
ttagataaaaacttaactaaagaagatgcattatctgatatatataaggtaatgagaccg
ggtgaaccttctactccggaagctgccgaagctttgttcagaagtaccttttttgaaaaa
gaaaaatatgatctttcaccgattggtaggatgaaaattaatgctaagcatgatttgaaa
atccctgaagatcatagtgtgctaacaaaggaagatataatagctattgttaagcatatt
attaaattaaaagacgggtttggcgaagtagatgatattgataacctcggcaatagaaga
gtaagatcagttggtgaattagttgaaaatcaattcagactaggtttagtcagaatggaa
agaactataatggaaagaatggcttcggttgagattgataccgtaatgccgcatgacctt
ataaattctaaagttttaatgtcagtacttagagaattctttggtacttcgcaactttcc
cagtttatggatcaaactaacccgttatctgagattacgcacaaacgtagattatctgcg
ctcggcccgggtggtttaactagagatagagcagggtttgaggtgcgggatgtgcatccg
actcactacggaagaatatgtccgattgaaactcctgaagggcaaaacattggtcttata
aactcacttgcaagttatgcgagagttaataaatacggatttattgagagcccatacaga
aaagttgtagaaggaaaagtaactgatgaagtgcattatttatcggctattgaagaaagc
aaatatgttattgctcaagcaaatgctaagttaaataaagacggaacttttgcagaagag
ttagtcagatccagagaagacggagaaattatagttgctactcctgataagatgaactac
atggatgtatcacctcaacaactagtttctgttgctgcttcattaatcccgtttttagaa
aatgatgatgctaacagagccttaatggggtcgaacatgcaacgtcaagctgttcctctt
gttaagtctgaagcaccgttagtcggtactggaatggaaggggttgtagcttcagattct
ggtgcgactgtggttgccagaagagacggagtagtagatagagttgatgctaaccgtatt
gtggtaagaagtcaggagcatgctgaagatgcgccgggtgttgatatatatacacttgta
aaatatcaaaaatctaaccaaaacacttgcattaaccaaaggccggttgtcaaggtagga
gatatcgtcaagagtggtgatattattgccgatgggccgagtactgatcttggtgagctc
gctttaggtaaaaacgttcttgcagcatttatgccgtggaacggctataactatgaggat
tctattcttctttccgaaagattggttaaagaagatgtgtttacttctatccacattcaa
gaatttgaagtggttgcaagagatacgcgtttaggacctgaagagatcactcgtgatatt
cctaatgtcggcgaagaaagcttgaaacatcttgatgaaataggtgttgtacacgtcggt
gccgaagtgaagcctggagatatcttggttggtaaagttactccgaaaagtgaatcaccg
attaccccggaagaaaaattacttagagcaatcttcggtgaaaaagcggctgatgttcgt
gattcctcgcttagagttcctccgggagctaaaggtacggtagtttcggtaagagttttc
accagaagaggtgttgaaaaagatgaaagagctattgcgcttgaaaggcatgagattgag
aggttatctaaagatagggatgatgagctcaatattctgcaaaactatgctttcggcagg
gttaaggaattattgcttaacaacacgattgtttcagctccgaagcctctgaagcaaggt
gatacaattaccgaaaatactttcaatgaaattccgaagcgtatgatttggcaaattgta
gtggatgacaccacagcaatgaatcagctggagaaaattaaatctatttatgatcagtat
attgaaaaactggaagatagatttaagaagaaggttgagaaagtacaaagtggtgatgat
cttccacaaggcgcgcttaaagttgttaaagtttatctggcaactaagcttaaaattcag
cctggtgataaaatggccggaaggcatggaaataaaggtgttgtatctaaaattgttcca
attgaggatatgccgttcttagaagatggaactccggttgatttagttttaaacccgctt
ggtgtaccatcgaggatgaacgtaggacagattcttgaaacgcacttaggatgggcatca
gcaaatttaggtaggcaaatcggtgcaattctggataaactggaagagcgtaaaaatatt
gaagagctaagaagtaaactcgacgagatttatgcttcggaagtgaatcaaaatgaccaa
gatcttatcgcaagtatgaatgaagatgagctaaaagaattagcaggtaacttaactaag
ggtgtaccatatgccactccggtatttgatggagcaaaagaagaggatattactaaagct
ttacaaaaagccggtgttaatgtctctgggcaggcaactctgattgatggtagaaccggt
atatcttttgatagaaagattacggtcggttatatttacatgatgaaacttgaccacttg
gtagatgataagattcatgctcgatcaatcggcccttacagcttagtaactcaacagccg
ctgggaggtaaatctcatttcggtggtcaaagattcggtgaaatggaatgttgggcgtta
caagcttatggagctgcatatactctacaggaaatgttaaccgttaaatcggatgatgta
accgggcgtattaagatgtatgaagcaattgtaagaggtgatgtatcatttgaatcggga
gtgccggaatcatttaatgttatggttaaagaattaagtgctttaggccttaacgttgaa
aagagaaagagtgaagaataa
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