Endosymbiont of Acanthamoeba sp. UWC8: I862_06805
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Entry
I862_06805 CDS
T03255
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eaa
Endosymbiont of Acanthamoeba sp. UWC8
Pathway
eaa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I862_06805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eaa03400
]
I862_06805
Enzymes [BR:
eaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I862_06805
DNA repair and recombination proteins [BR:
eaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I862_06805
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AIF81915
UniProt:
A0A075MLB7
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All DBs
Position
1405394..1408825
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AA seq
1143 aa
AA seq
DB search
MLRQDFLKQKRLYLPKSTEAKVITQYLETSDFVCYVADQESEIDNIAAAVNFFMPSAEIV
YFPAWDALPYDRVSPGSEVCLQRIKALSRLLESKNRKKVLITTFANLLQKTFPKDLLLAT
IINIKINDKVSRDAFLNNLNTLGYLRSATANEPGEYAIRGGIIDIVSNNENSGFRISFFG
DEVDSLKLFDTENQLSLEKVERCTIYPVSEIVLNDDTVEIFKNNYRKLFGVFNDPLLEAV
SAKSKYTGMEHWLPLFYDDLSSLFDYIPASAVILYHDKLTDDLKEHYQFIEESYTTRIKL
SSDKSYHPISPSLLYIEPEQCGIILNKYITKTLCSFQSEHDVQYFSPAKNLFIESKTNNL
STLETLRNYIEQLKPSFQTKDRKQRRFVICCFTSGSRGRLKNMLLDNNFHAIDINCSDEI
NNLSGKTLGLAILPVEQGFTFENYVFLSEQDLLGERLSRARKRKKNAAKFIQEAATLSEG
EFVVHIDHGIGRFEKLETLEVAGAVHDFIKIIYRDDDKLYVPVENLEVISKYGGDDIAVT
LDKLGGVAWQTRKAKLKNRLKLAAEELLKTAAKREVEKGIVLEAIPDMYDKFCRKFPYME
TEDQLAAIEDIEQDLRSGKPLDRLVCGDVGFGKTEVALRAVAVAVLSDVPLQVAVIVPTT
LLSRQHYQNFSNRFADFPVRVAQLSRFVPRKEADQVKKDLEDGKVDIIIGTHALLSNDIK
FKNLGLIIIDEEQHFGVAQKEKLKKLKSYTHIITLSATPIPRTLQMSLSGIKDLSLITTP
PVDRQPIKTYIMPYDAFIIREAILRECARGGRTFYVTPRISYLDELELKLKEILPEIKTV
RAHGQMPASKLDQIMNDFYDGKFEVLLSTTIVESGLDIPFANTMIIDRADMFGLAQLYQI
RGRVGRSNNRAYAYLIPGKGYNLNPIAKKRLEVIQSLETLGAGFTVASHDMDIRGHGNLI
GEEQSGHIREVGLELYQDMLAEAIEKLKLNESDEESSNWSPTINIGVSVQIPESYIGDDS
LRLSIYRKIAQISDIKELESFAAELIDRFGNLPEEAEQLFAIIKLKQLAKQLNIEKIDLG
DKALVINFKNGKPGNKANPLEFIRKHSDHAKLRADGKLLIMREWKTQNAKIKGVENILIQ
LGV
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgcttagacaagattttttaaaacaaaagagattatatttacctaaaagcactgaagca
aaagttattactcagtatttggaaacctctgactttgtttgttatgttgcagaccaagaa
tctgaaattgataatatagcagctgccgttaacttttttatgccttcagctgaaatagta
tatttccctgcttgggatgctctcccttatgatcgggtttctcccggttctgaagtatgt
ctacaaagaataaaagccttgagcaggctacttgaatctaaaaaccgtaagaaagtttta
attactacttttgctaatcttttgcaaaaaacttttcctaaagatttactcctcgcaact
ataattaatattaaaataaatgataaggtttcacgggatgcgtttttaaataacttaaat
actttaggatatctaagatctgcaactgcaaatgagcccggtgagtatgctataaggggt
ggaattattgatattgtttcaaataatgagaattccggatttagaatcagctttttcggt
gatgaagtagactcactaaaactctttgatactgaaaatcaacttagtttggaaaaagtt
gaacgctgtacgatttatcccgttagtgaaatagtgcttaatgatgatacggttgagatc
tttaaaaataattatagaaaattattcggtgtttttaatgatccacttttagaggcggtc
agcgctaaaagtaaatacaccgggatggaacattggctaccgctgttttatgatgattta
agcagcttgtttgactacattcccgcttctgcggtaattttatatcacgataaattaacg
gatgatttaaaggagcattatcagttcattgaagaatcctatactacaagaattaagcta
tcatccgataaaagttatcaccctataagcccttcgcttttatatattgaacccgagcag
tgcggaattattttaaataaatatattactaaaaccctttgcagctttcagtcagagcat
gatgtacaatatttttcacccgctaaaaatctctttatcgagtctaaaactaataatctt
tccactttagaaactttaagaaactatatagagcaactaaaaccttcgttccaaactaaa
gaccgtaaacaaagaaggtttgtcatttgctgctttacctcaggttccagagggcggtta
aaaaatatgcttttggataataattttcacgcaattgatattaattgttcggatgaaata
aacaatctttcagggaaaactttaggacttgcgattttgcctgttgagcaaggttttact
tttgaaaattatgtttttttaagtgaacaggacttgcttggtgaaaggttgtcgcgtgca
cgaaagcgaaaaaagaatgcggctaagtttatacaggaagcagcaactctttccgaaggg
gagtttgtagttcatattgatcacggaatcggtaggtttgaaaagcttgaaactttagag
gtagcaggtgctgtacatgactttataaaaattatttatagagacgatgataaactttat
gttccggttgaaaatttagaggtaatttcaaaatacggcggagatgatattgccgtaact
ctcgataaattaggcggagtagcttggcaaaccagaaaagctaagcttaaaaacaggcta
aaacttgcagctgaagaactgttgaaaaccgctgcaaaacgtgaagttgaaaaaggtatt
gttttagaggcaatacctgacatgtatgacaaattttgccgcaaatttccttatatggag
actgaagatcaacttgctgcaatagaggatatagagcaggacttaagaagcggtaagcct
ttggatcgccttgtctgcggtgacgtcggattcggtaaaaccgaagttgccttaagggcg
gttgcggttgccgtgctttcggatgttcctctgcaggttgcggtcattgttccgacaact
ctgctttcccgccagcattatcaaaatttcagtaatcggtttgcggactttccggtaaga
gttgctcagctctcaaggttcgtgcctagaaaagaagccgatcaagtcaagaaagatttg
gaagacggtaaagtcgatatcattatcggtactcatgcgcttttaagtaatgatataaaa
tttaaaaatttggggctgataattattgatgaagagcagcatttcggtgtagctcagaaa
gaaaaacttaagaaattgaaatcctatactcatatcattacactttccgctactcctatt
cccagaaccttacaaatgtccttaagcggaattaaagatttaagtttaattactacccct
cccgtagatagacaaccgattaaaacttatataatgccttatgatgcttttataatcagg
gaagcaatattgcgcgagtgtgcaagagggggcagaactttttatgttacaccgagaata
agctatcttgacgagttggaattaaagcttaaagagatacttcccgaaattaagacggta
agggctcacggccaaatgcctgcttcaaagcttgatcaaattatgaatgatttttatgac
gggaagtttgaagttttgctatcgactactattgttgaatcagggttggatatacctttt
gctaatactatgattattgatagagcggatatgttcgggcttgcgcaactttatcaaatt
agaggaagagtaggcagaagtaacaatagggcgtatgcttatctgatacccggtaaaggg
tataacttaaatccgattgctaaaaagcgtttggaagttattcagtctctcgagacatta
ggcgcgggctttacggtcgcttcacatgatatggatatcagggggcacggtaatttaatc
ggtgaggagcaatcggggcacataagagaggtagggctggagctttatcaggatatgctt
gccgaagcaattgaaaaattaaaacttaatgagtcagatgaagaatcatctaattggagc
ccgacaattaatatcggggtctcggtacaaattccggagagctacatcggtgatgattcc
ttaaggctttccatataccgtaaaattgctcaaatttctgatattaaagaactggaaagc
tttgctgcagaattgattgatagattcggtaacttacctgaagaagccgagcaacttttt
gcaataataaaattaaaacaacttgctaaacagctcaatatagaaaaaattgatttggga
gataaagctttagtaattaattttaaaaacggaaagcccggtaataaagcaaaccctttg
gaatttattcgcaagcattcggatcatgctaagcttagagctgacggcaagctcctaatt
atgagagaatggaaaactcaaaatgctaaaattaaaggagtggaaaacatattaatccaa
ctaggggtttaa
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