Escherichia coli ABU 83972: ECABU_c36610
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Entry
ECABU_c36610 CDS
T01995
Symbol
yhdA
Name
(GenBank) cyclic diguanylate phosphodiesterase (EAL) domain protein
KO
K18765
RNase E specificity factor CsrD
Organism
eab
Escherichia coli ABU 83972
Brite
KEGG Orthology (KO) [BR:
eab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eab03019
]
ECABU_c36610 (yhdA)
Messenger RNA biogenesis [BR:
eab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ECABU_c36610 (yhdA)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
GDPD
Motif
Other DBs
NCBI-ProteinID:
ADN48113
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All DBs
Position
complement(3728732..3730672)
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQAVATAIDTYLVSNDFST
LRPQITELMMSADIVRVDLLHGDKQVYTLARNGSYRPVGTNDLFRELSVPLIKHPGMSLR
LVYQDPMGNYFHSLMTTAPLTGAIGFIILMLFLAVRWLQRQLAGQELLETRATRILNGER
GSNVLGTIYEWPPRTSSALDTLLCEIQNAREQHSRLDTLIRSYAAQDMKTGLNNRLFFDN
QLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHSQVEEQFFSLTNLLSTFMMRYPGAL
LARYHRSDFAALLPHRTLKEAESIASQLIKAVDTLPNNKMLDRDDMIHIGICAWRSGQDT
EQVMEHAESATRNAGLQGGNSWAIYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAV
TREGRVHHRELMCRIFDGNEEVSSAEYMPMVLQFGLSEEYDRLLISRLIPLLRYWPEENL
AIQVTVESLIRPRFQRWLRDTLMQCEKSQRRRIIIELAEADVGQHISRLQPVIRLVNALG
VRVAVNQAGLTLVSTSWIKELNVELLKLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQV
YATGVRSRSEWQTLIQRGVTGGQGDFFASSQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgagattaacgacgaaattttcggcctttgtcacgctgctcaccgggttaacaattttt
gtgactttgctgggctgttcgctaagtttctacaacgccattcagtataagtttagtcat
cgtgttcaggcggtggcgacggcgattgatacctaccttgtgtcgaatgacttcagcaca
ttaaggccacaaattaccgaattaatgatgtcggcagatatcgttcgtgtagacctgctc
catggtgataagcaggtttataccctggccagaaatggtagttatcgtccggttggcacc
aacgatctgtttcgtgaactgagcgttccgttgataaagcatccggggatgtcgctgcgt
ctggtttatcaggatccgatgggcaactatttccattctttaatgactaccgcgccgctc
acgggggcgattggctttatcattcttatgctcttcctggcggtacgctggttacaacgg
caacttgccgggcaagaattgctggaaacccgggctactcgtatcttaaacggtgagcgt
ggctctaatgtgttgggaaccatctatgaatggccgcccagaaccagcagtgcgctggat
acgctgctttgtgaaattcagaacgcacgcgaacaacacagccgtcttgatacgctgatc
cgctcttatgccgcccaggacatgaaaaccggcctcaataaccgactctttttcgataat
cagttagcaacgttactggaagatcaagagaaagttggtacccacgggatcgtgatgatg
attcgtctgccggatttcaatatgttgagtgatacctgggggcacagccaggttgaagaa
cagttcttctctctgacgaatctgctatcgacatttatgatgcgctaccctggcgcactg
ctggcgcgttaccaccgcagtgattttgctgcgctgttaccgcaccggacgttaaaagag
gcagagagcatcgccagtcagttaatcaaagccgtcgataccttgccgaacaataaaatg
ctcgatcgcgacgatatgatccacattggtatctgtgcctggcgtagtggtcaggatacc
gagcaggtaatggaacatgcagagtctgccacgcgtaatgcgggattgcagggcggcaat
agctgggctatttacgatgactcgttgcctgaaaaaggacgcggtaatgttcgctggcgt
acgcttatcgagcaaatgctcagtcgcggcggcccgcgcctttatcaaaaaccggcggtt
actcgcgaaggccgggttcatcatcgtgaactcatgtgccgcatcttcgatggtaatgaa
gaggttagctcggcagagtatatgccgatggtcttgcagtttggtttatcggaagagtat
gaccgcctgctaatcagccgtcttattccactattgcgttactggccagaggaaaatctg
gcgattcaggttaccgttgagtcgctgattcgcccgcgttttcagcgttggctgcgcgat
acgttaatgcaatgtgaaaaatcgcaacgaagacgcataattattgaacttgcagaggcc
gatgttggtcaacatatcagtcgcttacaacctgttattcgtttagtgaatgctttaggg
gtacgggtagccgtcaaccaggctggtttgacgctggtaagcaccagttggatcaaagaa
cttaatgttgagttactcaagctccatccggggctggtcagaaacattgagaagcgaacg
gagaaccaactgctggttcaaagcctggtggaagcctgctccgggaccagcacccaggtt
tacgccaccggcgtgcgttcgcgaagcgagtggcagaccctgattcagcgtggtgttaca
ggtgggcaaggggattttttcgcgtcctcacagccacttgatactaacgtgaaaaaatat
tcacaaagatactcggtttaa
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