Escherichia coli ABU 83972: ECABU_c38420
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Entry
ECABU_c38420 CDS
T01995
Symbol
rtcR
Name
(GenBank) sigma-54 dependent transcriptional regulator RtcR
KO
K14414
transcriptional regulatory protein RtcR
Organism
eab
Escherichia coli ABU 83972
Brite
KEGG Orthology (KO) [BR:
eab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
eab03000
]
ECABU_c38420 (rtcR)
Transcription factors [BR:
eab03000
]
Prokaryotic type
Other transcription factors
Others
ECABU_c38420 (rtcR)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA
Mg_chelatase
AAA_16
NACHT
AAA_22
AAA_30
AAA_7
AAA_33
AAA_19
AAA_2
AAA_14
T2SSE
ATPase_2
TsaE
ResIII
MCM
BrxC_BrxD
NB-ARC
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
ADN48282
LinkDB
All DBs
Position
3889277..3890875
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AA seq
532 aa
AA seq
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MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLK
RDIASVSPETEVVGVEIELHNPWDFEEVYACLHDFARGYAFQPEKEDYLIHITTGTHVAQ
ICWFLLAEARYLPARLIQSSPPRKKERPDSPGAVTIIDLDLSRYNAIASRFAEERQQTLD
FLKSGIATRNSHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIFELKQARHQFSG
AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA
MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG
LRQRQEDIEPNLDYEVGRHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT
RMATFATSGRITLDTVEDEINRLRYNWQESRPSTLTALLGAEAENIDLFDRMQLEHVIAI
CRQAKSLSAAGRELFDISRQGKASVNDADRLRKYLARFGLTWEAMQDQHSSS
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaacagtggcttttggctttgtcggaacggtgctggattatgccgggcgcggc
agtcagcgctggtcaaaatggcgtccgacactctgtctatgccagcaagaatcgttagtt
atcgatcggctggaattattgcacgacgcccgctcgcgctcgctattcgaaacgcttaaa
cgcgatatcgccagcgtttcgccagaaacagaagtggtgggcgttgagatagaactgcat
aacccttgggatttcgaagaggtttacgcctgcctgcatgatttcgcccgtggttacgcg
ttccagccagaaaaagaagactatttaattcacatcaccaccggtacccacgtcgcgcag
atttgctggtttctgctggcagaagcgcgttacctgcccgcccggttgatacaatcttca
ccaccgcgcaaaaaagagcggcccgatagccctggcgcggtgacgattatcgatctcgat
ttaagccgttataacgccatcgccagccgctttgccgaggaacgccagcaaacgcttgat
tttcttaagtccggcattgccacgcgtaactcccacttcaaccgcatgattgagcagatc
gaaaaagtggcgatcaaatcccgcgcaccgatcctgcttaacggcccgaccggtgcgggt
aagtcatttctggcgcgacgcatctttgaattaaaacaggcacggcatcagtttagcggc
gcgtttgtggaagtgaactgcgccaccctgcgcggcgataccgccatgtcgacgctgttt
ggtcatgtgaaaggcgcgtttaccggggcgcgggaatcgcgtgaaggattattacgcagc
gccaacggcggaatgttgtttcttgatgagattggcgaactgggcgcagacgaacaggcg
atgttgctaaaagccattgaagagaaaaccttttacccgtttggcagcgatcgccaggtg
agcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagttggttgccgaa
ggcaaatttcgtgaagacctgtacgcgcggatcaatctctggaccttcaccttgccagga
ttacgccaacgccaggaagatattgaaccgaacctggattatgaagtggggcgccacgcc
tcactcactggcgacagcgtgcgttttaacaccgaagcgcggcgtgcctggctggccttt
gcgacctctccccaggcaacatggcgcggtaactttcgcgaactttctgccagcgtcacg
cggatggccacctttgccactagcggacgcatcacactggatacggtggaagatgagatc
aaccgtctgcgctataactggcaggagagtcgcccctccacgcttacggcgttgctgggc
gcagaggcagaaaacatcgatctcttcgaccgtatgcaactggaacacgttatcgctatc
tgccgccaggcaaagtcgctttctgctgccggacgtgaactgtttgacatttcgcgccag
ggtaaagccagcgtcaatgacgcggatcggctacgcaaatacctggcgcgttttggtctg
acatgggaagcaatgcaggatcagcacagctccagttga
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