Peptoclostridium acidaminophilum: EAL2_c15760
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Entry
EAL2_c15760 CDS
T03061
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
eac
Peptoclostridium acidaminophilum
Pathway
eac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EAL2_c15760 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eac03019
]
EAL2_c15760 (rnr)
03016 Transfer RNA biogenesis [BR:
eac03016
]
EAL2_c15760 (rnr)
Enzymes [BR:
eac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EAL2_c15760 (rnr)
Messenger RNA biogenesis [BR:
eac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EAL2_c15760 (rnr)
Transfer RNA biogenesis [BR:
eac03016
]
Prokaryotic type
tRNA degradation factors
EAL2_c15760 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
S1_RRP5
DUF1918
Oberon_cc
Motif
Other DBs
NCBI-ProteinID:
AHM56871
UniProt:
W8U7L2
LinkDB
All DBs
Position
complement(1572787..1574922)
Genome browser
AA seq
711 aa
AA seq
DB search
MEKILKDKLLGLIKEEAYIPLSARELADIFDIHDSERPMFYEKLDEMVNEGYLYRTKKKK
YGLPQKMNLFVGRLEVTQRGFGFIVSEEENLEDLFVPANGLNGALHGDKVTARITKCAAE
GKRSEGEIIKVIERGYSTIVGTFEASAKYGFVVPDEKKFNMDIYVAKGDEMKAKNGDKVV
CKITKWPERGRSPEGEIVEILGKKGIPEVEVLSIIRQHGVPEEFPKKVLKEAESIDEAVV
QSEIAKRVDLRGKTIVTIDGADAKDLDDAVSVELLPNGNHLLGVHIADVSHYVVENSKID
REALKRGTSVYFADRVIPMLPQKLSNGVCSLNPNVNRLTLSVSMEIDKEGSVVKHEIYES
VIKSQARLVYEDISDILEKPGEEGTRPLEEKYSHLLEDFKRMEQLARILMKKREKRGAID
FDFPEAKIIFDEKGEVSDVKKYDRRISNRIIEEFMLVCNETVAEEFFWLAIPFVYRIHET
PDLEKMHDFNRFIAAYGYHIKGDLESVHPKALQELVHEIRGKDEELAVSMIMLRSLKQAR
YAPACSGHFGLAAKYYSHFTSPIRRYPDLQIHRIIKEFLNGGIKQNRIEELKGIVAKASE
QSSLREREADEAEREVDDLKKAEYMSHRIGEEYPGFISGVTSFGIFVQLDNTVEGLVRLS
SMDDDYYIFDSEKYMVVGERTKKIFRIGEKVRVRVESVNMDFKEIEFAMAK
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaatattgaaagacaagctgctgggactcataaaggaagaggcttacatcccg
ctgtcggccagagagcttgcagacatattcgacatacacgattctgaaaggccaatgttc
tacgagaagcttgatgaaatggtcaacgagggctacctttacaggacaaaaaagaaaaag
tatggtcttcctcagaagatgaatctgtttgtgggaagactcgaagttacgcaaagggga
tttggatttatagtatcagaagaggagaatcttgaggatctttttgtacctgccaacgga
ctaaacggcgcgcttcatggtgacaaggtaacagcccgtataacaaaatgcgctgcagag
ggcaagagatctgaaggcgagataatcaaggtcatcgaaagaggctactccacaatagtg
ggcaccttcgaggccagtgcaaagtacgggtttgtcgtgccggacgaaaagaagttcaac
atggacatatacgtggcaaagggcgacgagatgaaggccaagaatggcgacaaggtcgta
tgcaagataacaaaatggcctgagaggggaagaagccccgagggtgagatagtcgagata
ctcggtaaaaaagggattcctgaggttgaggtgctttcgataataaggcagcacggcgta
cccgaggagttcccgaaaaaagtgctgaaagaggccgaatcaattgatgaggcagttgtt
cagagtgaaatagcaaagagagtagacctcagagggaaaacaatagttacaatagacggc
gccgatgcaaaggaccttgacgatgcagtgtccgtggagcttcttccaaacggcaaccac
ttgcttggagttcatatcgcggacgtgtcgcactatgtagttgagaactcaaagattgac
agggaagctctaaagaggggaacgtctgtatattttgcagatagagtgataccaatgctg
ccgcaaaagctttcaaacggcgtgtgcagccttaatccgaatgtgaacagactgacactt
tcggtgtccatggagatagacaaggagggcagcgtagtaaagcatgagatatacgaatct
gtaataaagtcgcaggcaagactcgtatacgaggacatatctgacatacttgaaaaaccg
ggcgaagaaggcaccaggccgcttgaagagaagtactcgcatctccttgaggatttcaaa
aggatggagcagctcgccagaatattaatgaaaaaaagggaaaaaaggggagcgatagac
tttgacttcccggaagcaaagataatattcgatgagaagggtgaggtttctgacgttaaa
aaatacgacagaaggatttcaaacagaattatagaagaattcatgctagtgtgcaacgag
actgtcgcggaggaatttttctggcttgcgataccattcgtctataggatacacgaaact
ccggacctggaaaagatgcatgacttcaacagattcatagctgcatacggctaccacata
aagggagatcttgagtctgtgcatccaaaggcccttcaggagctggttcacgagatcagg
ggcaaggacgaggagcttgcagtgagcatgataatgctaagatcgctcaagcaggcaaga
tacgcacctgcctgcagcggccacttcggacttgcagcaaaatactattcgcactttact
tcccctataaggagataccctgacctgcagatacacaggattataaaggaattcttaaac
ggtggaataaagcagaacaggatagaagagttaaagggtattgtggcaaaagcatccgaa
cagtcatcgctaagagaaagggaggctgacgaggctgaaagagaggtagatgaccttaaa
aaggctgaatacatgagccacaggattggcgaggaatatccgggcttcatatcgggagtc
acttcctttggaatattcgtgcagctcgacaacacagtagaaggattagtgaggctttct
tctatggacgacgactactatatattcgacagtgaaaaatacatggttgtgggagaacgc
accaagaagatattcagaattggggaaaaggtaagagtgagggtggaaagcgttaatatg
gatttcaaggaaattgagtttgcaatggctaagtaa
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