Klebsiella aerogenes KCTC 2190: EAE_16485
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Entry
EAE_16485 CDS
T01529
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eae
Klebsiella aerogenes KCTC 2190
Pathway
eae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EAE_16485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eae03400
]
EAE_16485
Enzymes [BR:
eae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EAE_16485
DNA repair and recombination proteins [BR:
eae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EAE_16485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AEG98208
UniProt:
A0A0H3FRC8
LinkDB
All DBs
Position
complement(3555264..3558710)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYTLPVKAGDQRQLGELTGAACATLVAEMAERHHGPVVLVAPDMQNALRLNDEIR
QFTDSMVIGLADWETLPYDSFSPHQDIISSRLATLYQLPTMQRGVLIVPVSTLMQKVCPH
NYLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY
RLDFFDDEIDSLRLFDVDSQRTLEEVEAINLLPAHEFPTDQAAIELFRSQWRDRFDVKRD
PEHIYQQVSKGTLPAGIEYWQPLFFNEPLPPLFSYFPSSTLIVNTGDLEHSAERFQNETR
ARFENRGVDPMRPLLPPEQLWLRSDELFSELKKWPRVQLKTERLAEKAAHTNLGYQPLPE
LAIQAQNKAPLDNLRRFLESFSGPVIFSVESEGRREALGEMLARIKVAPKHILRLQEASG
NGRFLMIGAAEHGFIDSQANLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQNEVKL
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDALVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EGQSGQMETIGFSLYMELLENAVDALKEGREPSLEDLTSQQTEVELRMPALLPDDFIPDV
NTRLSFYKRIASTKNEHDLDEIKVELIDRFGTLPDAARNLLDITRLRQQAQKLGIRKLEC
NEKGGVIEFNEKNNVNPVWLIGLLQKQPQHYRLDGPTRLKFFQELDERKTRMDWVRQFMR
QLEENATA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgctatactctgccggtcaaagccggcgatcagcgccagcttggc
gaactcaccggcgccgcctgcgccacgctggtagccgaaatggccgaacgccatcatggc
ccggtggtgctggtggcgcctgacatgcaaaacgccctgcgtttgaatgatgaaatcagg
caatttaccgatagcatggtgatcggcctcgctgactgggaaaccctgccctacgatagc
ttttcgccacatcaggatattatctcttcgcgccttgcgactttataccagttgccgacc
atgcagcgcggcgtgcttatcgttccggtcagcactctgatgcagaaggtctgcccgcat
aattatctgcacggtcacgcgctggtaatgaaaaaagggcaacgtctgtcgcgcgatgcg
ctacgcacgcagttggacagcgccggttaccgccatgtcgatcaggtaatggaacacggc
gaatacgcgacccgcggcgccctgctcgacctcttcccgatgggcagcgagcagccctat
cgcctcgatttcttcgatgacgaaatagacagcctgcggttattcgatgttgatagccag
cgtactctggaagaagtcgaggccatcaatttgctgccggcgcatgagttcccaaccgac
caggcggcgatcgaactgttccgcagccagtggcgcgatcgctttgacgtgaagcgcgat
ccggaacatatctaccagcaggtaagcaaaggtaccctgcccgccgggatcgaatactgg
caaccgctgttcttcaacgagccgctgccgccgctgtttagctatttcccctccagtacg
ctgattgtgaataccggcgatctggagcacagcgccgagcgtttccagaatgaaacccgc
gcccgctttgaaaaccgcggcgtcgatccgatgcgcccgctgctaccgccggaacaactg
tggctgcgcagcgacgaactttttagcgagctgaaaaaatggccgcgggtccagttaaaa
accgagcgtctggcggagaaagccgctcatactaatctcggctatcaacccctgcccgag
ttggcgattcaggcgcagaataaagcgccgctggacaacctgcgacgcttccttgaatcc
ttcagcggcccggtgattttctccgttgaaagcgaaggccgccgcgaggcgctgggcgaa
atgctggcgcgcatcaaagttgcgccaaaacatatattgcgcctgcaggaagccagcgga
aatggtcgtttcctgatgatcggcgccgccgagcacggatttatcgacagccaggctaat
ctggcgctgatttgcgaaagcgatctgctgggcgaacgcgtcgcccgccgccgtcaggat
tcccgccgtaccatcaaccccgatacgctcattcgcaacctggcggaactgcatatcgga
cagccggtggtgcaccttgaacatggggtgggtcgttatgcggggatgaccaccctcgaa
gccgggggcatcaaaggcgaatatctgatgctgacctacgccaacgacgccaaactgtac
gtcccggtatcgtcactgcatttgattagccgctacgccggcggggcggaagaaaatgcg
ccgctacacaaactgggcggcgatgcctgggcgcgggcaaggcaaaaagcggcggagaaa
gtgcgcgacgtcgccgccgaactgctggatatctacgcccagcgcgcggccaaagaaggc
ttcgcctttaagcatgaccgcgagcagtatcaattattctgcgacggtttcccgttcgaa
accacaccagatcaggcgcaggcaatcaacgccgttctcagcgatatgtgccagccgctg
gcaatggaccgcctggtgtgcggcgacgttggcttcgggaaaaccgaagtggcgatgcgc
gccgccttcctcgccgtcgaaaaccacaaacaggtggccgtgctggtgccgaccaccctg
ctcgcccagcagcactacgataacttccgcgaccgcttcgccaactggccggtacgcatt
gagatgctatcgcgtttccgcagcgccaaagagcaggcgcagatcctcgaacaggcggca
gaaggtaaaatcgatattctgatcggcacccataagctgctgcaaaatgaagtcaagctg
cgcgacctgggtctgcttatcgtcgatgaagaacaccgcttcggggtgcgtcataaagaa
cgcatcaaggcgatgcgcgcggacgtcgatatcctgacgctgaccgccacgcctattccg
cgtacgcttaatatggcgatgagcggaatgcgcgatctgtccattatcgccaccccgcca
gctcgccgtctggcggtaaaaacctttgtccgcgaatatgacgcgctggtggttcgcgag
gcgatcctgcgtgaagtcctgcgcggcggtcaggtttactatctgtataacgatgttgaa
aatattcagaaagcggcggatcgtctggcggaactggtgccggaggcgcgaattgccatc
ggtcacggccagatgcgcgaacgcgaactggaacgggtgatgaatgatttccatcaccag
cgttttaacgtgctggtctgtacgacaattattgaaaccggcatcgatatcccgaccgcc
aataccatcatcattgagcgcgccgatcacttcggccttgcccagctgcaccagctgcgt
ggccgcgtgggtcgttcgcaccatcaggcctacgcctggctactcaccccacatccgaaa
gcgatgactaccgacgcgcagaaacgcctggaagctatcgcttcgctggaagacctcggc
gccggctttgcccttgcgacccacgatcttgaaattcgcggcgccggcgaactgctggga
gaaggccagagcggacagatggaaaccatcggcttctcgctgtatatggaactgctggag
aacgccgtcgatgccctgaaagagggtcgcgagccgtcgctggaagatctcaccagccag
cagacggaagtggagctgcgcatgccggcgctgctgccggatgactttattcccgacgtg
aacacccgtctgtcgttctataagcgtatcgccagcaccaaaaacgaacacgatctcgat
gagatcaaagtcgagctgatcgatcgctttggcacattgccggatgcggcgcgtaatttg
ctggatatcacgcgcctacgccagcaggcgcaaaagctggggatccgtaagctggagtgc
aatgaaaaaggcggcgtgatcgagtttaacgagaaaaataatgtgaacccggtctggctt
atcggtctgctgcagaagcagccgcagcattaccggctggatgggccaactcgtcttaaa
tttttccaggagctggatgagcgtaaaacacgtatggactgggtacgccagtttatgcgt
caactggaagaaaacgccaccgcttga
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