Eurytemora carolleeae: 111694883
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Entry
111694883 CDS
T07296
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
eaf
Eurytemora carolleeae
Pathway
eaf03013
Nucleocytoplasmic transport
eaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eaf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111694883
03015 mRNA surveillance pathway
111694883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eaf03019
]
111694883
Enzymes [BR:
eaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111694883
5.6.2.5 RNA 5'-3' helicase
111694883
Messenger RNA biogenesis [BR:
eaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111694883
mRNA cycle factors
Common to processing body (P body) and stress granule
111694883
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
DEAD
ATPase
UvrD-helicase
Helicase_RecD
NPHP3_N
SLFN-g3_helicase
nSTAND3
AAA_16
AAA_22
SRP54
VapB
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
111694883
NCBI-ProteinID:
XP_023319704
LinkDB
All DBs
Position
Unknown
AA seq
1111 aa
AA seq
DB search
MHFISFASKFCLFRDLGIGADTQGDEYQFAYTLPSQSQVEDSFSKLIIKETNENNNLEDR
ELQFEDEEEEGGGAGRLHLPSNSCAYCGVHDPSTLVNCNICKRWFCNSRGNTSGSHIVNH
MVRAKHKEVTLHKDGPLGETVLECYSCGVRNVFVLGFIPAKADSVVVLLCRQPCAAQNSL
KDMNWDQEQWRPLISDRQLLNWLVKVPSDGEQLRARQITGAQINKLEDLWKENIDAEFQD
LEKPGVDEDPQQVLLRYQDGYQYQNIFGPLVKLEADYDKRLKESQTQDNIEVRWDVGLNK
KITAYFTMAKNDSDLRLMQGDELRLRYLGDLQKSWSGVGHVIKVADNFGEDIGIELKSNQ
GAPTTCTSNFVIDYVWKSTSFDRMQAALRKFAVDDTSVSAYIYHRLLGHDVDDVLFRTHL
PKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIIYQLVKLHGGPVLV
CAPSNTAVDQLTEKIHKTGLKVVRVCAKSREALDSPVAHLALHNQIKNLEGTGELQKLQL
LKDETGELSSNDEKRYRILRKQSEKDLLDLADVICCTCIGAGDPRLARMKFSSILIDESM
QSTEPECMVPAVLGAKQLILVGDHCQLGPVVMCKKAANGGLSQSLFERLVVLGIRPFRLE
VQYRMHPQLSKFPSNFFYEGSLQNGVSGEDRKLNVEFPWPQPDIPMMFYVATGQEEIAGS
GTSFLNRTEAASVEKIATKFLKAGIKPEQIGVVTPYEGQRSFLVQYMQYQGSLHSKIYQE
LEIASVDAFQGREKDIIIISCVRSNEHQGIGFLADPRRLNVALTRAKYAVIVVGNPKVLS
KQPLWNHLLHHYKENRCLVEGPLSNLKESLMQFSKPRKLVNAMNPGSHFMNTAMFDAREA
MAPGGVYDRIRGRIETRPGARTDIRHDPLTYIGPDRQATLPPSNLPIPVGIFMNMAHVPP
RFYNQHQQQLAQQLEGRAPPPTSSMCNLLISRFYNQHQQQLAQQLEGRAPPPTSSTGKRQ
NKKGKDSYLSQGSQDISQGYSQGPLTQGGLSQPGLSLSQTGLSQTEFSQDSLIAGDIHSQ
LDGLLSQDSTYQGDRFASQRHQQYLSQFSQQ
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgcattttatctcgtttgcttcaaaattttgcttgtttagggatttgggtataggtgcg
gatacacagggtgatgaatatcagttcgcgtacaccctaccttcccagtcccaggtggag
gacagcttcagtaagctcatcatcaaggagaccaacgagaacaacaacctagaggacagg
gagctccagtttgaggatgaagaggaggaagggggcggggctggaaggctccacctaccc
tccaacagctgtgcctactgtggtgtgcatgatccctctacccttgtaaactgtaatatc
tgtaaacgttggttctgcaacagtcggggaaatacatccggcagccatattgtcaatcat
atggtcagagctaaacacaaggaggtgaccctgcacaaggacggccccctaggagagact
gtgcttgagtgctacagctgcggggtgaggaacgtgttcgttctcgggttcatacccgca
aaggcggacagtgtagtagttctactctgtaggcaaccctgcgctgcacagaatagttta
aaggatatgaactgggatcaggaacagtggcgacctctgatctctgaccggcagctgttg
aactggctggtcaaggttcccagcgacggagaacagctccgtgctcgtcagatcaccggc
gcgcagataaacaaattagaagatttatggaaggagaatattgatgcagagttccaggat
ctagagaagcctggagtagatgaagaccctcagcaggttctcctcagatatcaggatgga
taccaataccagaatatattcggtcccctcgtcaaactagaggccgactacgacaagagg
ctgaaggagagccagacccaggacaatatcgaggtcaggtgggacgtcggcctcaacaag
aagataacggcgtacttcacaatggccaagaatgacagcgacctacgcctgatgcagggt
gatgaactgagactcaggtatttgggagaccttcagaagtcctggtccggagtaggtcac
gtgattaaggttgcggacaattttggagaagatattggaatagagctgaagagcaaccaa
ggagctcccaccacctgcacgtcgaacttcgtcatcgactatgtctggaagtccaccagc
ttcgaccggatgcaggcggctctacggaagttcgccgtagacgacactagtgtatccgcg
tatatctatcacaggcttttgggacatgacgtagatgatgttttgtttagaactcatctc
cctaaacatttctcagctccgaaccttcctgatctaaacagatcccaggtgtacgctgta
aagcatgccttgcagcgtcccctgtccttgatccagggacctccaggaactggaaagacg
gttacttctgctactattatctaccagctggttaaactacacggagggccagttctagtc
tgtgcgccatctaatacagctgtagatcagcttacagagaagatccacaaaaccggttta
aaggttgtacgagtatgtgccaagtctagagaagcattagactctcctgtagctcatcta
gcactacacaatcagattaaaaacctggagggaacaggagaactacagaagctccaacta
ctcaaggatgagactggagaactgtcaagtaacgatgagaagagatacaggattctccga
aagcagagtgagaaggatctgctcgatctagccgatgtaatctgttgtacatgtattgga
gccggagatcccagactggccaggatgaagttctcttctatactgatagatgagagcatg
cagagtactgaacctgaatgtatggtacccgctgtacttggggctaaacagctcatattg
gttggtgaccactgtcagcttggtcctgtagttatgtgtaagaaggctgccaacggagga
ctgagtcagtccctgtttgagcgtcttgttgttcttggaatccgtcctttccgtctcgag
gttcagtatagaatgcatcctcagctcagtaagttcccatccaacttcttctacgagggt
tcgttgcagaacggagtatccggtgaggaccggaagctgaatgtagagtttccctggcct
caacctgatatacccatgatgttttatgttgcaacaggacaggaggagatcgctggaagc
ggaacctcattcctgaacaggactgaggcggccagcgtcgagaagatcgcgacaaagttc
ctcaaggccgggattaaacctgaacagatcggcgtggtcactccttacgagggacaacgt
agtttcctggtccagtatatgcagtatcagggttccctccactccaagatctaccaggag
ttggagattgcaagtgtggacgcgttccagggtagagagaaggatatcattattatctcc
tgtgttcgatctaacgaacatcaagggataggtttcctagcggatccaagacgtctgaac
gtagctctaacccgggccaagtatgctgtgattgttgtaggcaatcctaaagttctctca
aagcaacctctatggaaccatcttctccaccattacaaagagaacagatgtcttgtggag
ggtcccttgtccaacctgaaggagagccttatgcagttctctaagccgagaaagcttgtg
aatgccatgaaccctgggagccacttcatgaacaccgccatgtttgacgctagggaggca
atggcgcctggtggagtgtacgacaggataagaggaagaattgagactagacccggagca
aggacggatatcagacatgatcctctcacttatattggacctgaccgccaagctactcta
cctcctagcaaccttccaatccctgtaggaatattcatgaacatggcccatgtacctccc
aggttctataatcagcatcagcagcagttagctcagcagctagaaggacgggctccaccc
cctaccagtagtatgtgtaatctgttaatatctaggttctataatcagcatcagcagcag
ttagctcagcagctagaaggacgggctccacctcctaccagtagtacgggtaaacgacag
aacaagaaaggaaaagattcatatctctcccagggtagtcaagatatcagccaaggatac
agtcagggtcctctaacccaggggggattatcccaacctggactctctctatcacaaact
ggactttcacagactgaattctcacaggatagtttaattgctggagatattcattctcag
ttggacggtttattatcccaggattcaacatatcagggagacaggtttgcaagtcagaga
catcagcaatacctttcccagttctcacagcagtga
DBGET
integrated database retrieval system
