Eurytemora carolleeae: 111698352
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Entry
111698352 CDS
T07296
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K19719
collagen type II alpha
Organism
eaf
Eurytemora carolleeae
Pathway
eaf04512
ECM-receptor interaction
eaf04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
eaf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111698352
04518 Integrin signaling
111698352
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
eaf00536
]
111698352
Glycosaminoglycan binding proteins [BR:
eaf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111698352
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
111698352
NCBI-ProteinID:
XP_023324432
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MAGWQTLLLVVWLGALGSVLADPAPKPRPRAKPQDPNENYDYSYGDYSEGEGQGYYDENN
NNDYGEPSEPEGYGPAPSTGRVEVDYSIDDSDGCAEVDCPNVQECPVQPYVPLGECCPIC
PVPMETVRPRTEVDAQGSIGSEGDRGREGDEGPRGRPGSPGISGTPGIPGMPGPPGPQPD
IQPFLNQIQQSQGSEKGPSPDPFTYMQAQVGPVGPRGSPGMRGPAGPQGFTGPQGEPGDA
GPSGPPGSIGERGLTGLPGKEGEPGRDGEPGASGPPGPPGRRGLPGMPGIPGPKGHRGFP
GLDGAKGELGGPGSKGEEGASGPMGPGGPIGPSGPRGERGRDGPPGPPGLRGIDGAMGPP
GEPGGVGKPGPPGFPGTPGAKGDMGAPGDKGSIGLQGPRGESGKPGMSGEPGKMGPPGKD
GSNGEKGGPGAPGAPGPPGFPGPRGQSGLNGSPGPHGPKGLNGEPGMVGMKGEGGLKGEM
GAQGPRGLPGPTGAAGNRGPRGIRGPAGPQGPIGEPGAPGGRGMPGPDGPAGPKGQNGDQ
GLMGPQGDKGKPGDMGRPGPPGLQGLRGPPGRSGPRGAGGPTGKTGEPGQDGKNGEPGPQ
GLQGLPGPMGSPGDKGPMGEQGHQGNPGVTGQQGPRGDPGKDGLPGMNGPPGPSGPAGER
GASGSPGPRGFQGMPGPPGKDGMSGKDGETGIQGPPGMMGNEGKRGSRGFPGERGSLGPP
GPPGLRGLDGGPGLDGPPGPTGPKGTPGHKGPPGLVGLPGQRGIPGPEGPKGGRGNPGLP
GPEGSVGKQGERGPQGISGPPGPPGEAGSPGDPGQAGPAGETGAAGAMGSRGPPGPQGMQ
GFPGPPGIPGMPGIKGDRGLTGDKGSQGNPGPAGGPGEPGPPGLTGLMGPKGARGEAGPR
GESGMMGPPGRPGEPGMPGEAGRQGAPGPSGLPGIKGSDGLRGPPGNRGPPGAQGMPGLE
GPKGSTGADGPPGPQGPVGSNGPPGDRGSPGLPGPTGPVGARGQQGAQGERGDSGLPGKE
GPTGPPGLQGPPGPMGQRGERGEEGPPGSQGTPGLGGRPGDKGPPGSAGQMGPPGAPGLP
GNVGKTGPPGPTGERGERGETGPQGIVGQPGMIGKPGPPGLQGPPGELGMSGEKGSKGHR
GLIGLQGLPGPIGPPGEKGPPGNPGNNGEPGTPGSRGPPGIDGAVGSPGLLGAPGPRGPQ
GEEGKRGPPGELGPPGPPGPPGESSGYDAAALSALLGQGNSKGPDPLSADEPMRNFGPEL
SDEDKKSLVLRAYKKLKASFEEFSNPDGGKNSPAKTCKDLHASYPEKKSGEYWIDPNGAD
TKDAILVFCDMEKDATCVQPKPVFSQEFNIESEEKEIWIGEVPESPFDINYKADSNQMSF
LQLLSAKAEQEIIYHCFNSFAFENIRGNNRKSLAFMSWNDLEIKHRGKFKYDVISDGCKD
KNNSWDKTVFRIESQKPTRLPVVDVKVQDFGNPSQKFKLEIGQVCFS
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atggcaggatggcagacacttcttctggtggtctggctgggagctttaggatccgtttta
gctgatcctgctcctaaacctagacctagagccaaaccccaggacccaaacgagaactat
gattacagctatggcgattattctgaaggagaaggccaagggtactatgatgaaaataat
aataatgattatggcgaaccgagtgaacctgaaggatatggaccagctccatctaccggt
cgtgtagaggtggactacagcatagatgattctgacggttgtgctgaagttgattgtccc
aatgtacaagaatgtcctgtgcaaccttatgtaccactgggagaatgctgtcctatctgt
ccggttcccatggagactgttcgtcctcgtactgaggttgatgcccagggatctataggg
tctgagggggaccgaggacgggaaggagatgaagggcctcgaggtcgacctggttctcct
ggtatctcaggtacccctggtataccgggtatgccaggacctcctggacctcaacctgac
atccaacctttcctcaaccagattcaacaatctcaaggatcagaaaaggggccttcacca
gacccatttacatatatgcaggctcaggttggacccgtgggacccagaggatctccaggt
atgcgtggacctgctggcccacaggggtttacaggtcctcaaggagaaccaggagatgct
ggtccctccggcccacctggcagtatcggagaacggggtctgacagggttacccggtaaa
gaaggagaaccagggcgggacggagaaccaggtgcatcaggtcctcctggacccccaggc
cggaggggacttcctggtatgccgggtatcccaggtcctaagggacatagaggatttcca
ggtcttgatggagctaaaggagaactaggaggaccagggtccaaaggagaagaaggagcc
tctgggccaatgggaccaggtggacctattggtccatcaggcccaagaggagaaagaggt
agagatgggcctcctggtccccctggcttaagaggtatagatggagctatgggacccccc
ggagaacctggtggtgttggtaaaccaggtccaccaggattccctggtactccaggagct
aagggagacatgggcgcaccaggagacaagggtagcattggacttcaaggtcctagagga
gagtctggaaaaccaggaatgtctggtgaaccaggaaagatgggaccacctggtaaagat
ggaagcaatggagaaaagggcggaccaggagcacctggtgctccaggtccaccgggcttc
ccaggacccagaggacaatctggtctcaatggaagtcctggaccacatggaccaaaggga
ctgaatggagagcctggtatggttggtatgaagggagaaggtgggctgaagggagaaatg
ggagcccaagggccaagaggtctacctggaccaacaggagcagctggaaacagaggacca
cgaggcattaggggaccagcaggacctcaaggacctattggagagcctggtgctcctgga
ggtagaggtatgcctggacctgatggacctgctggtccaaaaggccaaaatggggatcaa
ggcctaatgggtcctcaaggggataagggcaaacctggagatatgggaagacctggccct
cctggacttcagggtttgagaggacccccaggtagatcaggaccaagaggagcaggtggg
ccaactggtaaaaccggagaacctggacaggatggtaaaaatggagaacctggaccgcaa
ggacttcaaggtcttccaggtcctatgggatcacctggagataagggtcccatgggagag
cagggacatcaaggaaatcctggtgtaactggtcaacaaggacctagaggggaccctggt
aaggatgggctccccggaatgaatggcccaccagggccctctggacctgctggagagaga
ggagcatctggaagtcccggacccagaggattccaaggtatgcctggacctccaggtaag
gatggtatgtctggtaaggatggagagactggtatccagggtccacctggtatgatggga
aatgagggtaaaagaggatcaagaggattccctggagagagaggatctcttggaccccct
ggacccccaggactcagaggacttgatggtggtcctggtctagatggccctcctggacct
actggacctaagggaactcctggacacaagggacctcctgggctagttggattgccaggg
cagcgtggcatacctggacctgaaggacctaaaggggggcggggtaaccctggacttcct
ggaccagagggcagtgtgggtaaacaaggagagaggggccctcaaggtatttctggacca
ccagggcctcctggagaagctggtagccctggagatcctggacaggcaggacctgctgga
gaaactggagctgctggagccatgggttcccgtggaccacctggaccccagggaatgcaa
ggttttcctggtcctccaggtatacctggtatgcctggaatcaagggcgatcgagggctt
actggtgacaaagggtcccaaggaaatcctggacctgctggtggaccaggagagcctgga
ccacctggtctcacaggtttaatgggtccaaagggagccagaggtgaagcaggaccaaga
ggagaatctggaatgatgggtccccctggaagacctggagaaccaggtatgccaggagag
gcaggaagacagggtgcgcctggaccatctggattacctggcatcaaggggagtgatggt
ctgagaggaccacctggaaaccgtggtccacctggagcacagggaatgcctggtttagaa
ggacccaaaggatctacaggagctgatggtcctccaggacctcaaggacctgtcggctca
aatggaccacctggagatagaggatcgcctggacttcctggaccaaccggaccagttggg
gctcgtggacaacaaggagctcaaggtgaaagaggagattctggattaccaggaaaagag
ggaccaactggacctccaggtcttcaaggacctccaggacctatgggtcaaagaggtgaa
agaggagaagaagggcctcctggatcacaaggaacacctggcttgggaggaagacctgga
gacaaaggtccacctggatctgctggacaaatgggaccaccaggagctcctggacttcct
ggaaatgttggtaagactggaccacctggacctactggagagagaggtgaaagaggagaa
actggacctcaaggaattgttggtcagccaggaatgattgggaaacctggaccaccaggc
cttcaaggacctcctggagaacttggaatgtctggtgaaaaaggctccaaaggacataga
ggacttattgggttgcaaggtcttcctggaccaattggtccgccaggggagaaaggacct
ccaggaaaccctggaaataatggtgaacctggaacacctgggtctcgtggaccacctggt
attgatggagctgttggatcccctggtctccttggagcaccaggccctagaggacctcaa
ggagaagagggtaaacgtggacctcctggagagcttggtccacctggaccacctggacct
ccgggagaatcctcaggatatgatgctgcagctctttctgctttgttaggacaaggaaat
tctaagggaccagacccactgagtgctgatgaaccaatgagaaactttggtcctgaactc
tcggatgaagacaagaaaagccttgtcctaagagcttacaagaagttaaaagcttccttt
gaagaattttccaatcctgatggaggcaagaatagtcctgccaagacatgtaaggacctc
catgcatcttatccggagaagaaaagcggagaatattggattgatcctaatggagctgac
accaaggatgccatcctggttttctgtgacatggagaaggatgcaacatgtgttcaaccc
aagcctgttttctctcaggagttcaatatagaatctgaagagaaggaaatatggattgga
gaggtcccagagagcccctttgacatcaactacaaagcagacagcaaccagatgagtttc
cttcaacttctgtctgccaaggcagagcaggagattatctaccattgcttcaactccttt
gccttcgaaaacatcagaggcaacaacagaaagtccttggcgttcatgtcatggaacgat
ctggaaatcaagcacagaggaaagttcaagtatgacgtgatatctgatggatgcaaggac
aagaacaacagttgggacaagacggtgttccgtatagagtctcagaaaccaaccaggctt
ccagttgttgacgtcaaggttcaagattttggaaatccatcacagaaattcaaattggag
attgggcaagtctgcttcagttga
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integrated database retrieval system
