Eurytemora affinis: 111706958
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Entry
111706958 CDS
T07296
Name
(RefSeq) ATP-dependent RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
eaf
Eurytemora affinis
Pathway
eaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111706958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eaf03019
]
111706958
03012 Translation factors [BR:
eaf03012
]
111706958
Enzymes [BR:
eaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111706958
Messenger RNA biogenesis [BR:
eaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111706958
Translation factors [BR:
eaf03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111706958
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
ATPase
AAA_23
AAA_19
AAA_25
RMC1_C
PhoH
NACHT
Motif
Other DBs
NCBI-GeneID:
111706958
NCBI-ProteinID:
XP_023335683
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MSTDGGQYLDYRDGGWRGRGGDGSGRGRGGGGRGRGGGGRGGGGRGGGGRGGGGRGGGGR
GGDGRGGDGRGGIPPGLRGREIGMYFAKKSREKQKRERTEAHLPKDKLHYLERELEKALS
AQSAITGKSDHLQKLKNNIRGNAMMDELNSLEKKPRLDLKDNMEIMSSKDDYLLRDLLDA
ESNEIMEIKKRPKNLDQFRKTLPAAEKRDYIIDLVRKHQVTVITGETGCGKTTQVPQFLL
EDWIEREGDKCRIVITQPRRISAISVAERISQERGEILGGSVGYQIRLESVLPRRNGSIL
LCTTGIVLQWLQSCPTLDNITHLVLDEIHERDIHSDFLMTICQNILPVRPDLRLILMSAT
MDSNKFSRYFNGCPSVHIPGFTYPVQEFYLEDVLQMTNFRPKTGEKTYSRNHKSRSKYME
EMGPFLRHIESSGKYSVSVLEYLNNPECEELNMDLTASIVSHIHNTEDEGAILVFVPGLE
QISKLYRLLEPGGLLALSGSSVIFPLHSLMPTASQREIFKPPSPGTRKVIIATNIAETSI
TIEDVVYVVDCGKIKIKNFDVDSNTSTLQPEWISLANLKQRRGRAGRVQPGKCYHLFTKA
REGLLESYLPPEICRTSLEEVILQIKLLELGTCSQFLQKVLDPPSIEAVRLSLNTLRTIN
ALELRGGGEELTPLGFHLAQLPLDPQTGKMILMGAIFSCLDPVLSVAASLSFKDAFMVPL
GKEKDVDGIKQLFAGRTISDHMMLANVITEYTQSRSKSSFCWDNYISESVIKMLVEMKGQ
LARHLFNKKFLSSENYKSEAANLNSNNEALVRAIICSGLYPNVAKIKRVKKHEHEDTILC
TAREKRILFHPKSVVSKTKKFPYSWVVFHTKQKSSQTYLHDATVVSPLSLLFFGQEVRTG
LETLENSRERLETVSADSFITFNCERSTASIVSRARSALDSVIEEKVSHPSSTCWQSSQG
RILNLIVSLLDTELEGLQFEEEEEEQGSNQRGEPGYQRFENSFERGEGKVGRNLRGKDRT
RGEGERLNKNWSPW
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacagacggaggtcaatatttggattatagggatggaggatggaggggtagagga
ggagatggaagtggtagaggtcggggtggaggaggtagaggacgaggaggtggaggacgt
ggtggtggaggacgtggtggtggaggacgtggtggtggaggacgaggaggtggaggacga
ggaggagatgggcgaggaggtgatggacgaggaggtattcctcccggattacgaggacgt
gaaataggaatgtactttgcaaagaaatcccgggagaagcagaagagagagagaacagaa
gctcatctacccaaggataaactccactacctcgagagggagctggagaaggcactttct
gctcagagtgcgattacgggaaaatctgatcatcttcaaaaattgaaaaataatatcaga
gggaatgctatgatggatgaattgaacagtttagagaagaaacctcggttggatctcaag
gataatatggaaatcatgtcgagcaaggacgattatctactccgtgacctgctggatgct
gaatccaacgagatcatggaaatcaaaaaacgtccaaagaatctggatcagtttaggaaa
acccttccggccgccgagaagagagattatattattgatttagttagaaagcatcaagtt
acagttataactggagaaacgggatgtgggaaaactacccaggttcctcagtttcttcta
gaggattggatagagagagaaggagacaaatgtagaatagttattactcagccccgacgg
atctccgctatatcagtagcagaacggataagtcaggagcgcggagagattctgggcggg
agtgtaggatatcagatccgacttgaatccgtcctacccaggagaaatggatcaattctt
ctctgcacaacaggtatagttctgcagtggttacagagctgcccaaccctggataatatt
actcatctagtcctagacgagattcatgaacgtgatattcattctgatttcctgatgacc
atctgccaaaacatcctgcccgtgaggccggacctccgccttatcctgatgtcggcgacg
atggactcgaacaagttctctagatatttcaatggttgtcctagcgttcatatccccggg
ttcacttacccagtacaggagttctatctagaggatgttctgcaaatgacaaattttaga
ccaaagacaggagagaaaacgtactcaagaaaccataaatcaaggtccaagtatatggag
gagatgggaccgttccttaggcacattgagagctcaggaaagtactctgttagtgtcctg
gagtacctgaacaaccctgagtgtgaggagttgaacatggatctcactgctagcatagta
tcgcatatacacaatacagaggatgagggggctatccttgtatttgttcctggtttggag
caaatctctaaactataccgactcctggagccaggagggttgctagctctctcgggttca
agtgttatctttcctctccacagtctgatgccgaccgccagccagcgggagatatttaaa
cccccaagtccagggaccaggaaggtgattatagcgaccaacattgctgaaacttcaatc
acaatcgaggacgtggtttacgtcgtggactgcggcaagatcaagatcaagaattttgac
gtggactctaatacctcaaccctgcagccggagtggattagtttagcgaacctgaagcag
agaagaggtagagctggaagggttcagcccggtaaatgttatcatctatttactaaagct
agagaaggattacttgaatcgtatctgcccccggagatctgcagaaccagtctggaggag
gttatcctgcagattaaactcctggagctcggaacctgctcccagttcctccagaaggtt
ctagatcctccaagtatcgaagcagttcgtctctccttgaatactttgagaaccattaac
gctttggagctgaggggtgggggtgaggagttgactccactagggttccatctagctcag
ctccccttggatcctcaaactgggaagatgatcctgatgggagcaatattctcctgtctt
gatcccgtcctatccgtggcagcaagcttgagcttcaaggatgcgttcatggtccccctg
gggaaggagaaggatgtcgatggtataaaacaactctttgctggtagaacgatatctgat
catatgatgctggccaacgtgatcacggagtacacgcagtccaggagcaagagcagcttc
tgctgggacaactacatctcggagtccgtcatcaaaatgctggtagagatgaaaggtcag
ctggctagacacctgttcaataagaagttcctgagctcagagaattacaagtccgaggct
gcaaacctcaactctaacaacgaggcgctggtcagagccatcatatgctcagggctctat
cctaacgtggccaagataaagcgcgtaaagaagcatgagcatgaggacactatactgtgt
actgcgcgcgagaaacgaatcctattccatcccaagtcagttgtctccaagacgaagaag
tttccttactcctgggtcgtcttccataccaaacaaaaatccagtcagacatatcttcat
gatgcaaccgtggtttccccgctctctcttctattcttcggtcaggaggttcgaactggg
ttggaaactctcgaaaattcgagagaaagactcgagacagtgagtgcagactcctttata
acctttaactgtgagaggagtacagcttctatagtatccagagcaaggtcagctttggat
tccgtcatagaggagaaggtttcccatcccagctccacctgctggcagagtagtcaagga
aggattcttaacctcattgtctccttactagacacagagctggagggattacagttcgag
gaggaggaggaggagcagggttcaaaccagagaggagaacctggataccaaagatttgag
aatagttttgagagaggagaagggaaggttggaaggaatctgagagggaaagacagaacc
aggggagagggggagagattgaataaaaactggagtccttggtga
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