Eurytemora carolleeae: 111707924
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Entry
111707924 CDS
T07296
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
eaf
Eurytemora carolleeae
Pathway
eaf03013
Nucleocytoplasmic transport
eaf03015
mRNA surveillance pathway
eaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111707924
09122 Translation
03013 Nucleocytoplasmic transport
111707924
03015 mRNA surveillance pathway
111707924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eaf03019
]
111707924
03041 Spliceosome [BR:
eaf03041
]
111707924
Enzymes [BR:
eaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111707924
Messenger RNA biogenesis [BR:
eaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111707924
Spliceosome [BR:
eaf03041
]
Complex C
Other components
EJC/TREX
111707924
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111707924
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
Cas9_PI
Motif
Other DBs
NCBI-GeneID:
111707924
NCBI-ProteinID:
XP_023336880
LinkDB
All DBs
Position
Unknown
AA seq
429 aa
AA seq
DB search
MAETDVNEDLLDYEEEEAAEAGGDAGKDAVKTKKEGVKGNYVSIHSSGFRDFLLKPEILR
AIGDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLV
MCHTRELAFQISKEYERFSKFLAGVKVGVFFGGLPIAKDELVLKNNCPHIVVGTPGRILA
LTRGKKLNLKNLKHFVLDECDKMLAELDMRRDVQEIFRSTPHEKQVMMFSATLSKDVRPV
CKKFMQDPMEVYIDDEAKLTLHGLQQHYVKLKDSEKNRRLFELLDVLEFNQVVIFVKSVQ
RCVALSQLLVEQNFPTIAIHRGMSQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNI
VFNYDMPEDTDTYLHRVARAGRFGTKGLAITMVSDEADAKTLNEVQERFEVDITELPEEI
DLSTYIEGR
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggccgagaccgatgttaacgaagatcttttggactacgaagaggaggaggcagcagag
gccggcggagatgctggtaaggatgccgtgaagaccaagaaggaaggagtgaaaggaaac
tatgtttctattcacagctcaggattcagagatttcctcttgaagcctgagatactccgc
gccattggagactgtggtttcgagcatccttcagaggtccaacacgagtgtattccccag
gctgtgttgggtatggatatcctatgccaggccaagtctgggatgggaaagacagctgtg
tttgttcttgcaactcttcaacagctggagccagtagatgggcaggtttctgttcttgta
atgtgtcacaccagggagctggctttccagatcagtaaggagtacgagaggttcagcaag
ttcctcgctggtgtcaaggttggagttttcttcggaggtctccctattgctaaagatgaa
cttgttctcaagaataattgtcctcacattgttgtcggaacccctggcagaatccttgcg
ctgacccgtggtaagaagctgaacctcaagaacttgaaacattttgttctggacgagtgc
gataaaatgctcgcagagcttgacatgaggcgggatgttcaggaaattttccgatccact
cctcacgagaagcaggtcatgatgttctccgccaccctcagcaaggacgtgagacccgtc
tgtaagaagtttatgcaggatcctatggaggtgtatattgatgacgaagctaagctgacc
ctgcacggtctgcagcagcactacgtcaagctgaaggacagtgagaagaacagaagactg
ttcgaactcctggatgttctagaattcaaccaggttgttatatttgtgaagagtgttcaa
cgttgtgtagctctatcccaactactggtggaacagaacttccctaccattgctattcac
agaggaatgagccaggaggagagactatcaagatatcagcagttcaaggatttccagaag
cgtatcctggtagcgaccaacctgttcggccgaggaatggacattgagcgtgtgaacatc
gtgttcaattacgacatgccggaggacaccgacacctaccttcacagggttgccagggca
ggaaggttcggtaccaagggtttggctatcaccatggtgtccgacgaggccgatgcaaag
accctgaacgaggtccaggagaggttcgaggttgacatcaccgaactaccggaggagatc
gatctatccacctatatcgaggggcgttag
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